This is the pathway enrichment analysis practical of the OBDS course

load packages

# load librarys

library(tidyverse)
## Warning: package 'tidyverse' was built under R version 4.2.2
## -- Attaching packages --------------------------------------- tidyverse 1.3.2 --
## v ggplot2 3.4.0      v purrr   0.3.5 
## v tibble  3.1.8      v dplyr   1.0.10
## v tidyr   1.2.1      v stringr 1.4.1 
## v readr   2.1.3      v forcats 0.5.2
## Warning: package 'ggplot2' was built under R version 4.2.2
## Warning: package 'tibble' was built under R version 4.2.2
## Warning: package 'tidyr' was built under R version 4.2.2
## Warning: package 'readr' was built under R version 4.2.2
## Warning: package 'purrr' was built under R version 4.2.2
## Warning: package 'dplyr' was built under R version 4.2.2
## Warning: package 'stringr' was built under R version 4.2.2
## Warning: package 'forcats' was built under R version 4.2.2
## -- Conflicts ------------------------------------------ tidyverse_conflicts() --
## x dplyr::filter() masks stats::filter()
## x dplyr::lag()    masks stats::lag()
library(gprofiler2)
## Warning: package 'gprofiler2' was built under R version 4.2.2

Read in our tables from this morning in a new Rmd file

# read in results table we output from DESeq2 this morning using tidyverse read_csv()

all_genes_df <- read_csv("CD8_vs_CD4_DE_results_lfcshrinkage.csv")
## Rows: 22535 Columns: 9
## -- Column specification --------------------------------------------------------
## Delimiter: ","
## chr (3): ensembl_gene_ids, mgi_symbols, gene_symbols
## dbl (6): baseMean, log2FoldChange, lfcSE, pvalue, padj, ENTREZ_IDs
## 
## i Use `spec()` to retrieve the full column specification for this data.
## i Specify the column types or set `show_col_types = FALSE` to quiet this message.
# check its dimensions - and look at the top of the file -> what does this tell us about our table? 
dim(all_genes_df)
## [1] 22535     9
# dim = 22,535 -> this contains all genes -> need to filter to get those tested 

We want to perform a classic Over representation analsis (ORA) using gprofiler - to do this we first need to create our gene subsets

# Subset 1 - All genes tested in differential expression (this is our background/control gene list) - i.e. remove padj == NA 
head(all_genes_df)
## # A tibble: 6 x 9
##   ensembl_gen~1 baseM~2 log2Fo~3  lfcSE  pvalue     padj mgi_s~4 gene_~5 ENTRE~6
##   <chr>           <dbl>    <dbl>  <dbl>   <dbl>    <dbl> <chr>   <chr>     <dbl>
## 1 ENSMUSG00000~ 1.65e-1 -2.43e-2 0.601  8.54e-1 NA       MGI:MG~ Rp1       19888
## 2 ENSMUSG00000~ 3.36e-1 -7.34e-4 0.599  9.73e-1 NA       MGI:MG~ Sox17     20671
## 3 ENSMUSG00000~ 4.78e+2  2.61e-1 0.118  2.42e-2  0.0603  <NA>    <NA>         NA
## 4 ENSMUSG00000~ 6.90e+2  1.56e-1 0.101  1.16e-1  0.225   MGI:MG~ Mrpl15    27395
## 5 ENSMUSG00000~ 3.00e+3  2.16e-1 0.0651 8.37e-4  0.00303 MGI:MG~ Lypla1    18777
## 6 ENSMUSG00000~ 8.89e+2 -5.33e-2 0.0946 5.70e-1  0.729   MGI:MG~ Tcea1     21399
## # ... with abbreviated variable names 1: ensembl_gene_ids, 2: baseMean,
## #   3: log2FoldChange, 4: mgi_symbols, 5: gene_symbols, 6: ENTREZ_IDs
all_genes_tested_df <- all_genes_df[!is.na(all_genes_df$padj), ]
all_genes_tested_df
## # A tibble: 17,729 x 9
##    ensembl_gene~1 baseM~2 log2F~3  lfcSE  pvalue    padj mgi_s~4 gene_~5 ENTRE~6
##    <chr>            <dbl>   <dbl>  <dbl>   <dbl>   <dbl> <chr>   <chr>     <dbl>
##  1 ENSMUSG000000~  478.    0.261  0.118  2.42e-2 6.03e-2 <NA>    <NA>         NA
##  2 ENSMUSG000000~  690.    0.156  0.101  1.16e-1 2.25e-1 MGI:MG~ Mrpl15    27395
##  3 ENSMUSG000000~ 3003.    0.216  0.0651 8.37e-4 3.03e-3 MGI:MG~ Lypla1    18777
##  4 ENSMUSG000000~  889.   -0.0533 0.0946 5.70e-1 7.29e-1 MGI:MG~ Tcea1     21399
##  5 ENSMUSG000000~   18.4   0.274  0.445  3.86e-1 5.60e-1 <NA>    <NA>         NA
##  6 ENSMUSG000000~ 1106.    0.198  0.0890 2.46e-2 6.13e-2 MGI:MG~ Atp6v1h  108664
##  7 ENSMUSG000000~    1.78 -0.136  0.609  2.43e-1 4.00e-1 MGI:MG~ Oprk1     18387
##  8 ENSMUSG000000~ 3436.    0.0296 0.0655 6.65e-1 8.01e-1 MGI:MG~ Rb1cc1    12421
##  9 ENSMUSG000000~   28.3  -0.173  0.379  5.56e-1 7.17e-1 <NA>    <NA>         NA
## 10 ENSMUSG000000~ 1539.   -0.468  0.0789 2.01e-9 1.59e-8 MGI:MG~ Pcmtd1   319263
## # ... with 17,719 more rows, and abbreviated variable names
## #   1: ensembl_gene_ids, 2: baseMean, 3: log2FoldChange, 4: mgi_symbols,
## #   5: gene_symbols, 6: ENTREZ_IDs
# Subset 2 - All sig upregulated genes (padj < 0.05. & log2FoldChange > 1)

upreg_genes_df <- all_genes_df [all_genes_df$padj < 0.05 & all_genes_df$log2FoldChange > 1, ]
upreg_genes_df
## # A tibble: 915 x 9
##    ensembl_gen~1 baseM~2 log2F~3 lfcSE   pvalue     padj mgi_s~4 gene_~5 ENTRE~6
##    <chr>           <dbl>   <dbl> <dbl>    <dbl>    <dbl> <chr>   <chr>     <dbl>
##  1 ENSMUSG00000~   23.6     1.66 0.572 3.65e- 4 1.42e- 3 MGI:MG~ Slco5a1  240726
##  2 ENSMUSG00000~  196.      2.20 0.200 3.15e-29 7.26e-28 MGI:MG~ Ogfrl1    70155
##  3 ENSMUSG00000~  344.      2.82 0.159 6.72e-72 4.27e-70 MGI:MG~ Tbc1d8    54610
##  4 ENSMUSG00000~  603.      1.84 0.116 1.51e-57 7.74e-56 MGI:MG~ Fhl2      14200
##  5 ENSMUSG00000~  362.      1.28 0.139 1.10e-20 1.82e-19 MGI:MG~ Nrp2      18187
##  6 ENSMUSG00000~  198.      1.98 0.196 3.74e-25 7.52e-24 MGI:MG~ Adam23    23792
##  7 ENSMUSG00000~   17.7     3.07 0.746 2.73e- 6 1.51e- 5 MGI:MG~ Fn1       14268
##  8 ENSMUSG00000~    6.22    3.26 1.50  2.11e- 3 7.03e- 3 MGI:MG~ Cxcr2     12765
##  9 ENSMUSG00000~   47.1     2.22 0.413 6.51e- 9 4.90e- 8 MGI:MG~ Slc11a1   18173
## 10 ENSMUSG00000~  136.      2.79 0.250 5.38e-30 1.28e-28 MGI:MG~ Cyp27a1  104086
## # ... with 905 more rows, and abbreviated variable names 1: ensembl_gene_ids,
## #   2: baseMean, 3: log2FoldChange, 4: mgi_symbols, 5: gene_symbols,
## #   6: ENTREZ_IDs
dim(upreg_genes_df)
## [1] 915   9
# Subset 3 - All sig downregulated genes (padj < 0.05. & log2FoldChange < 1)

downreg_genes_df <- all_genes_df [all_genes_df$padj < 0.05 & all_genes_df$log2FoldChange < -1, ]
downreg_genes_df
## # A tibble: 1,204 x 9
##    ensembl_~1 baseM~2 log2F~3  lfcSE    pvalue      padj mgi_s~4 gene_~5 ENTRE~6
##    <chr>        <dbl>   <dbl>  <dbl>     <dbl>     <dbl> <chr>   <chr>     <dbl>
##  1 ENSMUSG00~   89.6    -1.10 0.274  1.32e-  5 6.64e-  5 MGI:MG~ Paqr8    7.42e4
##  2 ENSMUSG00~  116.     -1.76 0.249  1.92e- 13 2.10e- 12 MGI:MG~ Kcnq5    2.27e5
##  3 ENSMUSG00~   98.2    -2.47 0.289  9.86e- 19 1.48e- 17 MGI:MG~ Fam135a  6.82e4
##  4 ENSMUSG00~   32.2    -1.60 0.490  1.07e-  4 4.63e-  4 MGI:MG~ Bend6    3.21e5
##  5 ENSMUSG00~ 1059.     -4.15 0.115  8.49e-284 3.01e-281 MGI:MG~ Dst      1.35e4
##  6 ENSMUSG00~ 1507.     -1.52 0.0794 3.50e- 82 2.64e- 80 MGI:MG~ Aff3     1.68e4
##  7 ENSMUSG00~   16.2    -2.29 0.773  1.82e-  4 7.54e-  4 MGI:MG~ Npas2    1.81e4
##  8 ENSMUSG00~    5.74   -3.03 1.72   3.01e-  3 9.69e-  3 MGI:MG~ Gm16894  1.00e8
##  9 ENSMUSG00~   60.7    -3.54 0.421  3.26e- 18 4.78e- 17 MGI:MG~ Il1r1    1.62e4
## 10 ENSMUSG00~  137.     -1.02 0.222  1.19e-  6 6.91e-  6 MGI:MG~ Il1rl2   1.08e5
## # ... with 1,194 more rows, and abbreviated variable names 1: ensembl_gene_ids,
## #   2: baseMean, 3: log2FoldChange, 4: mgi_symbols, 5: gene_symbols,
## #   6: ENTREZ_IDs
dim(downreg_genes_df)
## [1] 1204    9
# Check the dimensions of each of your dataframes using dim()
# all_genes_df_filtered should be 17729
# upreg_genes_df should be 915
# downreg_genes_df should be 1204
# from each of these dataframes get a vector of the ensembl ids 

all_gene_ids <- all_genes_df$ensembl_gene_ids
    
upreg_gene_ids <-upreg_genes_df$ensembl_gene_ids
    
downreg_gene_ids <- downreg_genes_df$ensembl_gene_ids

#Perform ORA using g:profiler

  1. Look at documentation - https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html
# use the gost() function - what parameters should we include/change??

# we want to test the ORA of upreg_gene_ids vs our all_gene_ids

# get help for function
?gost() 
## starting httpd help server ... done
# write query and assign to output variable named `gost_results_obj`
gost_results_obj <- gost(query = upreg_gene_ids, organism = "mmusculus",exclude_iea = TRUE,correction_method = "g_SCS",custom_bg = all_gene_ids)
## Detected custom background input, domain scope is set to 'custom'
gost_results_obj$result
##       query significant       p_value term_size query_size intersection_size
## 1   query_1        TRUE  2.107197e-03         3        910                 3
## 2   query_1        TRUE  8.162242e-03         4        910                 3
## 3   query_1        TRUE  4.992293e-02         2        910                 2
## 4   query_1        TRUE 6.064566e-100      1293        910               255
## 5   query_1        TRUE  1.423457e-99      2195        910               330
## 6   query_1        TRUE  5.069491e-64      6166        910               508
## 7   query_1        TRUE  1.399244e-63       140        910                77
## 8   query_1        TRUE  4.659060e-59       407        910               116
## 9   query_1        TRUE  1.162991e-56      1209        910               193
## 10  query_1        TRUE  5.249905e-56       552        910               130
## 11  query_1        TRUE  5.706629e-56       275        910                95
## 12  query_1        TRUE  6.230068e-56       282        910                96
## 13  query_1        TRUE  8.371692e-56       276        910                95
## 14  query_1        TRUE  2.163717e-54       784        910               152
## 15  query_1        TRUE  7.062562e-54       425        910               113
## 16  query_1        TRUE  1.393829e-52       916        910               162
## 17  query_1        TRUE  1.513074e-52      1111        910               179
## 18  query_1        TRUE  1.998810e-52      1113        910               179
## 19  query_1        TRUE  3.888858e-52       602        910               131
## 20  query_1        TRUE  7.687026e-52      1006        910               169
## 21  query_1        TRUE  1.589598e-51      1140        910               180
## 22  query_1        TRUE  1.635668e-51      1225        910               187
## 23  query_1        TRUE  3.386643e-51      2078        910               250
## 24  query_1        TRUE  1.014386e-49       339        910                98
## 25  query_1        TRUE  4.550835e-49       857        910               152
## 26  query_1        TRUE  1.155217e-48       324        910                95
## 27  query_1        TRUE  1.429990e-48       528        910               119
## 28  query_1        TRUE  4.045675e-48       773        910               143
## 29  query_1        TRUE  4.936322e-48       242        910                83
## 30  query_1        TRUE  4.573130e-47      1848        910               227
## 31  query_1        TRUE  7.552616e-47       780        910               142
## 32  query_1        TRUE  7.763299e-47       145        910                66
## 33  query_1        TRUE  1.172027e-46      1303        910               186
## 34  query_1        TRUE  3.190003e-46       153        910                67
## 35  query_1        TRUE  3.436175e-46       117        910                60
## 36  query_1        TRUE  6.788926e-46       104        910                57
## 37  query_1        TRUE  5.586787e-45       276        910                85
## 38  query_1        TRUE  6.214854e-45       618        910               124
## 39  query_1        TRUE  6.894623e-45      3860        910               348
## 40  query_1        TRUE  7.194380e-45       159        910                67
## 41  query_1        TRUE  3.161976e-44       637        910               125
## 42  query_1        TRUE  5.862704e-44       661        910               127
## 43  query_1        TRUE  2.075747e-43       117        910                58
## 44  query_1        TRUE  8.307551e-43       331        910                90
## 45  query_1        TRUE  2.515264e-42       216        910                74
## 46  query_1        TRUE  6.829537e-42       372        910                94
## 47  query_1        TRUE  1.517391e-41       124        910                58
## 48  query_1        TRUE  1.971915e-41      4265        910               363
## 49  query_1        TRUE  2.469516e-41       533        910               111
## 50  query_1        TRUE  4.421286e-41       282        910                82
## 51  query_1        TRUE  1.106968e-40      4314        910               364
## 52  query_1        TRUE  6.469746e-40      2108        910               232
## 53  query_1        TRUE  9.301965e-40       428        910                98
## 54  query_1        TRUE  3.300858e-39       443        910                99
## 55  query_1        TRUE  3.855096e-39      3165        910               296
## 56  query_1        TRUE  8.407565e-39       341        910                87
## 57  query_1        TRUE  1.041185e-37       197        910                67
## 58  query_1        TRUE  1.716478e-37       172        910                63
## 59  query_1        TRUE  2.921060e-37       193        910                66
## 60  query_1        TRUE  3.192367e-37       382        910                90
## 61  query_1        TRUE  3.595537e-36       221        910                69
## 62  query_1        TRUE  2.268158e-32       204        910                63
## 63  query_1        TRUE  2.059199e-31      5099        910               383
## 64  query_1        TRUE  4.668333e-31      5117        910               383
## 65  query_1        TRUE  4.827052e-31      2954        910               266
## 66  query_1        TRUE  1.771609e-28       496        910                91
## 67  query_1        TRUE  1.810591e-27      4597        910               347
## 68  query_1        TRUE  9.675813e-27      8847        910               545
## 69  query_1        TRUE  2.034788e-24      8408        910               519
## 70  query_1        TRUE  4.186015e-24     14827        910               770
## 71  query_1        TRUE  8.975356e-19      7956        910               481
## 72  query_1        TRUE  1.618933e-17      1257        910               131
## 73  query_1        TRUE  1.055415e-15      1241        910               126
## 74  query_1        TRUE  5.267631e-15       726        910                89
## 75  query_1        TRUE  6.755757e-14      1368        910               130
## 76  query_1        TRUE  2.933808e-13      3398        910               243
## 77  query_1        TRUE  6.373505e-13       796        910                90
## 78  query_1        TRUE  7.964155e-13      2331        910               184
## 79  query_1        TRUE  1.867338e-12       781        910                88
## 80  query_1        TRUE  2.852995e-12       540        910                70
## 81  query_1        TRUE  3.981608e-12       216        910                42
## 82  query_1        TRUE  6.362281e-12      5231        910               330
## 83  query_1        TRUE  3.828121e-11       388        910                56
## 84  query_1        TRUE  4.794349e-11      1081        910               105
## 85  query_1        TRUE  4.856609e-11      1320        910               120
## 86  query_1        TRUE  1.021625e-10      1000        910                99
## 87  query_1        TRUE  1.090293e-10      3199        910               224
## 88  query_1        TRUE  1.582653e-10       340        910                51
## 89  query_1        TRUE  1.891685e-10      3292        910               228
## 90  query_1        TRUE  3.727571e-10      3177        910               221
## 91  query_1        TRUE  4.167784e-10      3432        910               234
## 92  query_1        TRUE  5.629797e-10       258        910                43
## 93  query_1        TRUE  5.845589e-10       874        910                89
## 94  query_1        TRUE  6.322663e-10     11697        910               606
## 95  query_1        TRUE  7.251044e-10       317        910                48
## 96  query_1        TRUE  7.385458e-10       238        910                41
## 97  query_1        TRUE  8.512241e-10      2744        910               197
## 98  query_1        TRUE  1.017640e-09       837        910                86
## 99  query_1        TRUE  1.250448e-09      4405        910               281
## 100 query_1        TRUE  1.272388e-09      2092        910               161
## 101 query_1        TRUE  2.779068e-09       154        910                32
## 102 query_1        TRUE  2.885352e-09       929        910                91
## 103 query_1        TRUE  3.766984e-09       206        910                37
## 104 query_1        TRUE  5.908131e-09       188        910                35
## 105 query_1        TRUE  7.535138e-09       532        910                63
## 106 query_1        TRUE  7.693616e-09      2173        910               163
## 107 query_1        TRUE  8.809356e-09      3786        910               247
## 108 query_1        TRUE  1.068354e-08      2969        910               205
## 109 query_1        TRUE  1.091120e-08      1240        910               109
## 110 query_1        TRUE  1.660789e-08       249        910                40
## 111 query_1        TRUE  1.821200e-08       195        910                35
## 112 query_1        TRUE  1.867337e-08      1435        910               120
## 113 query_1        TRUE  2.044474e-08       462        910                57
## 114 query_1        TRUE  2.239343e-08       463        910                57
## 115 query_1        TRUE  2.246938e-08       545        910                63
## 116 query_1        TRUE  2.369455e-08      1440        910               120
## 117 query_1        TRUE  2.454454e-08      1913        910               147
## 118 query_1        TRUE  2.626632e-08      2297        910               168
## 119 query_1        TRUE  2.726149e-08       647        910                70
## 120 query_1        TRUE  4.166272e-08      2291        910               167
## 121 query_1        TRUE  4.270955e-08        15        910                11
## 122 query_1        TRUE  4.517875e-08      4908        910               299
## 123 query_1        TRUE  5.338083e-08        12        910                10
## 124 query_1        TRUE  5.338083e-08        12        910                10
## 125 query_1        TRUE  5.338083e-08        12        910                10
## 126 query_1        TRUE  6.074301e-08      4732        910               290
## 127 query_1        TRUE  6.381586e-08        65        910                20
## 128 query_1        TRUE  7.318475e-08        97        910                24
## 129 query_1        TRUE  1.255354e-07       108        910                25
## 130 query_1        TRUE  1.314378e-07        16        910                11
## 131 query_1        TRUE  1.336163e-07       242        910                38
## 132 query_1        TRUE  1.479151e-07       641        910                68
## 133 query_1        TRUE  1.966603e-07       245        910                38
## 134 query_1        TRUE  2.275773e-07      4001        910               252
## 135 query_1        TRUE  2.402435e-07       575        910                63
## 136 query_1        TRUE  2.984931e-07      2346        910               167
## 137 query_1        TRUE  3.275154e-07       399        910                50
## 138 query_1        TRUE  3.477569e-07        49        910                17
## 139 query_1        TRUE  3.681953e-07      2655        910               183
## 140 query_1        TRUE  4.175980e-07       251        910                38
## 141 query_1        TRUE  4.285843e-07       671        910                69
## 142 query_1        TRUE  4.883894e-07       658        910                68
## 143 query_1        TRUE  5.285144e-07      2647        910               182
## 144 query_1        TRUE  5.298578e-07       486        910                56
## 145 query_1        TRUE  5.336842e-07       253        910                38
## 146 query_1        TRUE  1.000697e-06      5054        910               300
## 147 query_1        TRUE  1.041772e-06        52        910                17
## 148 query_1        TRUE  1.314862e-06      1373        910               111
## 149 query_1        TRUE  1.794026e-06       785        910                75
## 150 query_1        TRUE  2.048944e-06        77        910                20
## 151 query_1        TRUE  3.825641e-06        88        910                21
## 152 query_1        TRUE  3.998775e-06       862        910                79
## 153 query_1        TRUE  4.154208e-06        49        910                16
## 154 query_1        TRUE  4.315766e-06       116        910                24
## 155 query_1        TRUE  6.079918e-06       312        910                41
## 156 query_1        TRUE  6.502443e-06       128        910                25
## 157 query_1        TRUE  6.975241e-06       563        910                59
## 158 query_1        TRUE  7.357867e-06       825        910                76
## 159 query_1        TRUE  8.006582e-06        66        910                18
## 160 query_1        TRUE  8.029677e-06       240        910                35
## 161 query_1        TRUE  9.595034e-06       424        910                49
## 162 query_1        TRUE  1.051306e-05      1617        910               122
## 163 query_1        TRUE  1.051907e-05        67        910                18
## 164 query_1        TRUE  1.232314e-05      2925        910               191
## 165 query_1        TRUE  1.295856e-05       132        910                25
## 166 query_1        TRUE  1.439032e-05       443        910                50
## 167 query_1        TRUE  1.497747e-05       589        910                60
## 168 query_1        TRUE  1.760259e-05       474        910                52
## 169 query_1        TRUE  1.816154e-05       155        910                27
## 170 query_1        TRUE  1.977497e-05       519        910                55
## 171 query_1        TRUE  2.047836e-05      1420        910               110
## 172 query_1        TRUE  2.739782e-05       423        910                48
## 173 query_1        TRUE  2.739782e-05       423        910                48
## 174 query_1        TRUE  3.083665e-05       277        910                37
## 175 query_1        TRUE  3.535927e-05       870        910                77
## 176 query_1        TRUE  4.058160e-05        64        910                17
## 177 query_1        TRUE  4.110309e-05       792        910                72
## 178 query_1        TRUE  4.196187e-05       713        910                67
## 179 query_1        TRUE  5.039914e-05       162        910                27
## 180 query_1        TRUE  5.225714e-05        82        910                19
## 181 query_1        TRUE  5.652957e-05       283        910                37
## 182 query_1        TRUE  5.959046e-05        36        910                13
## 183 query_1        TRUE  6.202702e-05       704        910                66
## 184 query_1        TRUE  6.511430e-05        83        910                19
## 185 query_1        TRUE  7.090772e-05       379        910                44
## 186 query_1        TRUE  7.137813e-05       464        910                50
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## 190 query_1        TRUE  9.342094e-05      1281        910               100
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## 195 query_1        TRUE  1.290736e-04        38        910                13
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## 198 query_1        TRUE  1.427915e-04      1169        910                93
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## 203 query_1        TRUE  1.913389e-04       756        910                68
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## 205 query_1        TRUE  2.021125e-04       392        910                44
## 206 query_1        TRUE  2.063008e-04       615        910                59
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## 208 query_1        TRUE  2.553603e-04       395        910                44
## 209 query_1        TRUE  2.580351e-04      1218        910                95
## 210 query_1        TRUE  2.706178e-04       468        910                49
## 211 query_1        TRUE  2.722672e-04      1523        910               112
## 212 query_1        TRUE  3.174782e-04       153        910                25
## 213 query_1        TRUE  3.538123e-04        34        910                12
## 214 query_1        TRUE  3.543292e-04        56        910                15
## 215 query_1        TRUE  3.869065e-04       488        910                50
## 216 query_1        TRUE  3.957219e-04         9        910                 7
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## 219 query_1        TRUE  5.133792e-04       168        910                26
## 220 query_1        TRUE  5.832390e-04       910        910                76
## 221 query_1        TRUE  6.140164e-04       378        910                42
## 222 query_1        TRUE  6.146293e-04       510        910                51
## 223 query_1        TRUE  6.311133e-04       125        910                22
## 224 query_1        TRUE  8.040528e-04       484        910                49
## 225 query_1        TRUE  9.300886e-04       209        910                29
## 226 query_1        TRUE  9.580092e-04       563        910                54
## 227 query_1        TRUE  9.600923e-04       197        910                28
## 228 query_1        TRUE  1.146576e-03       140        910                23
## 229 query_1        TRUE  1.146576e-03       140        910                23
## 230 query_1        TRUE  1.212462e-03       276        910                34
## 231 query_1        TRUE  1.318732e-03       777        910                67
## 232 query_1        TRUE  1.360636e-03       318        910                37
## 233 query_1        TRUE  1.399842e-03       418        910                44
## 234 query_1        TRUE  1.420283e-03        31        910                11
## 235 query_1        TRUE  1.426178e-03      1351        910               100
## 236 query_1        TRUE  1.740209e-03       883        910                73
## 237 query_1        TRUE  1.817223e-03       228        910                30
## 238 query_1        TRUE  1.901885e-03         7        910                 6
## 239 query_1        TRUE  1.948196e-03       379        910                41
## 240 query_1        TRUE  2.137003e-03      1254        910                94
## 241 query_1        TRUE  2.150078e-03       296        910                35
## 242 query_1        TRUE  2.250850e-03       500        910                49
## 243 query_1        TRUE  2.292001e-03        55        910                14
## 244 query_1        TRUE  2.701708e-03       124        910                21
## 245 query_1        TRUE  2.781496e-03      1154        910                88
## 246 query_1        TRUE  2.814543e-03        83        910                17
## 247 query_1        TRUE  2.893607e-03       399        910                42
## 248 query_1        TRUE  2.966770e-03       711        910                62
## 249 query_1        TRUE  2.966770e-03       711        910                62
## 250 query_1        TRUE  4.009425e-03       800        910                67
## 251 query_1        TRUE  4.043835e-03      1980        910               132
## 252 query_1        TRUE  4.131303e-03      1828        910               124
## 253 query_1        TRUE  4.628609e-03       922        910                74
## 254 query_1        TRUE  6.329273e-03       580        910                53
## 255 query_1        TRUE  6.588232e-03       913        910                73
## 256 query_1        TRUE  6.790326e-03       310        910                35
## 257 query_1        TRUE  6.812261e-03        51        910                13
## 258 query_1        TRUE  6.853110e-03      1469        910               104
## 259 query_1        TRUE  6.936904e-03      1359        910                98
## 260 query_1        TRUE  7.333668e-03         8        910                 6
## 261 query_1        TRUE  8.394634e-03        29        910                10
## 262 query_1        TRUE  8.478030e-03       327        910                36
## 263 query_1        TRUE  9.205438e-03        44        910                12
## 264 query_1        TRUE  9.521462e-03       785        910                65
## 265 query_1        TRUE  9.701535e-03       111        910                19
## 266 query_1        TRUE  1.101852e-02        71        910                15
## 267 query_1        TRUE  1.171062e-02       275        910                32
## 268 query_1        TRUE  1.187445e-02       435        910                43
## 269 query_1        TRUE  1.253450e-02       825        910                67
## 270 query_1        TRUE  1.305420e-02       249        910                30
## 271 query_1        TRUE  1.462365e-02       880        910                70
## 272 query_1        TRUE  1.489665e-02        18        910                 8
## 273 query_1        TRUE  1.492067e-02      4314        910               244
## 274 query_1        TRUE  1.603866e-02       149        910                22
## 275 query_1        TRUE  1.758666e-02       681        910                58
## 276 query_1        TRUE  2.477568e-02        19        910                 8
## 277 query_1        TRUE  2.579657e-02      1178        910                86
## 278 query_1        TRUE  2.767867e-02        57        910                13
## 279 query_1        TRUE  2.885507e-02       560        910                50
## 280 query_1        TRUE  3.130014e-02        14        910                 7
## 281 query_1        TRUE  3.130014e-02        14        910                 7
## 282 query_1        TRUE  3.227865e-02       530        910                48
## 283 query_1        TRUE  3.945747e-02       319        910                34
## 284 query_1        TRUE  3.976110e-02        20        910                 8
## 285 query_1        TRUE  4.181594e-02       379        910                38
## 286 query_1        TRUE  4.259375e-02       633        910                54
## 287 query_1        TRUE  4.916077e-02       998        910                75
## 288 query_1        TRUE  5.380996e-68      1149        910               203
## 289 query_1        TRUE  1.283665e-66      1344        910               218
## 290 query_1        TRUE  3.207161e-61       478        910               127
## 291 query_1        TRUE  1.974705e-57      3472        910               350
## 292 query_1        TRUE  1.061042e-56       666        910               143
## 293 query_1        TRUE  1.262341e-56      3804        910               368
## 294 query_1        TRUE  2.815699e-54       838        910               157
## 295 query_1        TRUE  3.381468e-54       102        910                62
## 296 query_1        TRUE  5.014714e-51        98        910                59
## 297 query_1        TRUE  2.512821e-37      5323        910               409
## 298 query_1        TRUE  2.884809e-25     12660        910               695
## 299 query_1        TRUE  1.077994e-24     14756        910               769
## 300 query_1        TRUE  4.761550e-10       947        910                94
## 301 query_1        TRUE  9.418197e-09       886        910                87
## 302 query_1        TRUE  7.408544e-07       292        910                41
## 303 query_1        TRUE  3.558083e-06      1661        910               126
## 304 query_1        TRUE  2.958114e-05      1554        910               117
## 305 query_1        TRUE  7.658391e-04       899        910                75
## 306 query_1        TRUE  7.333668e-03         8        910                 6
## 307 query_1        TRUE  1.114734e-02       389        910                40
## 308 query_1        TRUE  1.114734e-02       389        910                40
## 309 query_1        TRUE  2.542119e-02       313        910                34
## 310 query_1        TRUE  2.737989e-02       314        910                34
## 311 query_1        TRUE  1.869022e-51       101        910                60
## 312 query_1        TRUE  2.209848e-49       156        910                70
## 313 query_1        TRUE  8.318160e-25      1163        910               139
## 314 query_1        TRUE  6.119202e-13      7203        910               426
## 315 query_1        TRUE  8.928458e-12       646        910                77
## 316 query_1        TRUE  8.928458e-12       646        910                77
## 317 query_1        TRUE  1.440857e-10       515        910                65
## 318 query_1        TRUE  1.367363e-09        19        910                13
## 319 query_1        TRUE  4.595280e-09      9204        910               498
## 320 query_1        TRUE  5.324088e-08       113        910                26
## 321 query_1        TRUE  5.337458e-07     14454        910               702
## 322 query_1        TRUE  3.957219e-04         9        910                 7
## 323 query_1        TRUE  1.901885e-03         7        910                 6
## 324 query_1        TRUE  2.120956e-02         9        910                 6
## 325 query_1        TRUE  3.878314e-02         6        910                 5
## 326 query_1        TRUE  2.379562e-09        73        910                21
## 327 query_1        TRUE  1.533598e-07        98        910                22
## 328 query_1        TRUE  3.508846e-07       102        910                22
## 329 query_1        TRUE  8.143541e-06        63        910                16
## 330 query_1        TRUE  1.119079e-04       330        910                37
## 331 query_1        TRUE  1.207102e-04       935        910                75
## 332 query_1        TRUE  2.073944e-04       426        910                43
## 333 query_1        TRUE  6.181532e-04       116        910                19
## 334 query_1        TRUE  9.342781e-04       404        910                40
## 335 query_1        TRUE  1.888432e-03       325        910                34
## 336 query_1        TRUE  4.093321e-03         7        910                 5
## 337 query_1        TRUE  8.736347e-03       523        910                45
## 338 query_1        TRUE  9.283125e-03        80        910                14
## 339 query_1        TRUE  1.023961e-02       103        910                16
## 340 query_1        TRUE  1.126553e-02       206        910                24
## 341 query_1        TRUE  1.128691e-02       663        910                53
## 342 query_1        TRUE  1.136332e-02       179        910                22
## 343 query_1        TRUE  1.225641e-02       497        910                43
## 344 query_1        TRUE  1.284227e-02       581        910                48
## 345 query_1        TRUE  1.801603e-02       284        910                29
## 346 query_1        TRUE  1.824896e-02        44        910                10
## 347 query_1        TRUE  2.057702e-02        54        910                11
## 348 query_1        TRUE  2.212549e-02        75        910                13
## 349 query_1        TRUE  2.257996e-02        45        910                10
## 350 query_1        TRUE  2.293933e-02       187        910                22
## 351 query_1        TRUE  2.689239e-02        99        910                15
## 352 query_1        TRUE  2.879738e-02      1540        910                99
## 353 query_1        TRUE  2.929264e-02       634        910                50
## 354 query_1        TRUE  3.056490e-02       277        910                28
## 355 query_1        TRUE  3.101164e-02      1030        910                72
## 356 query_1        TRUE  3.263438e-02       125        910                17
## 357 query_1        TRUE  3.597157e-02      1241        910                83
## 358 query_1        TRUE  3.609563e-02        22        910                 7
## 359 query_1        TRUE  3.770681e-02       193        910                22
## 360 query_1        TRUE  3.899523e-02       422        910                37
## 361 query_1        TRUE  4.775453e-02       182        910                21
## 362 query_1        TRUE  4.939313e-02       129        910                17
## 363 query_1        TRUE  4.939313e-02       129        910                17
## 364 query_1        TRUE  4.120516e-16        84        910                28
## 365 query_1        TRUE  7.832364e-10        49        910                17
## 366 query_1        TRUE  9.356325e-09        49        910                16
## 367 query_1        TRUE  3.538181e-08        53        910                16
## 368 query_1        TRUE  1.401678e-07        50        910                15
## 369 query_1        TRUE  4.534573e-07        21        910                10
## 370 query_1        TRUE  9.941072e-07      6424        910               350
## 371 query_1        TRUE  6.254301e-06       170        910                25
## 372 query_1        TRUE  8.507525e-06        75        910                16
## 373 query_1        TRUE  1.175361e-05        42        910                12
## 374 query_1        TRUE  1.355057e-05        68        910                15
## 375 query_1        TRUE  1.583606e-05       154        910                23
## 376 query_1        TRUE  2.134250e-05       219        910                28
## 377 query_1        TRUE  2.839290e-05       102        910                18
## 378 query_1        TRUE  2.861312e-05       159        910                23
## 379 query_1        TRUE  5.281831e-05        75        910                15
## 380 query_1        TRUE  5.281831e-05        75        910                15
## 381 query_1        TRUE  5.858933e-05        48        910                12
## 382 query_1        TRUE  1.056442e-04        69        910                14
## 383 query_1        TRUE  1.164287e-04       135        910                20
## 384 query_1        TRUE  1.846288e-04        53        910                12
## 385 query_1        TRUE  4.652143e-04       160        910                21
## 386 query_1        TRUE  1.076576e-03       106        910                16
## 387 query_1        TRUE  1.227049e-03        35        910                 9
## 388 query_1        TRUE  1.822909e-03       202        910                23
## 389 query_1        TRUE  2.140722e-03        77        910                13
## 390 query_1        TRUE  3.140423e-03       103        910                15
## 391 query_1        TRUE  6.048828e-03        33        910                 8
## 392 query_1        TRUE  2.051170e-02       121        910                15
## 393 query_1        TRUE  2.495075e-02        61        910                10
## 394 query_1        TRUE  2.632243e-02        85        910                12
## 395 query_1        TRUE  3.753069e-02       200        910                20
## 396 query_1        TRUE  2.269117e-02        28        910                 7
## 397 query_1        TRUE  8.071459e-50       103        910                58
## 398 query_1        TRUE  1.307235e-49        95        910                56
## 399 query_1        TRUE  5.241522e-49       101        910                57
## 400 query_1        TRUE  1.690470e-48       181        910                72
## 401 query_1        TRUE  2.390845e-48        86        910                53
## 402 query_1        TRUE  1.452178e-47       110        910                58
## 403 query_1        TRUE  3.123739e-46        96        910                54
## 404 query_1        TRUE  9.783516e-46       102        910                55
## 405 query_1        TRUE  1.159642e-45        89        910                52
## 406 query_1        TRUE  2.666324e-45       179        910                69
## 407 query_1        TRUE  1.307052e-44        92        910                52
## 408 query_1        TRUE  6.415408e-44       108        910                55
## 409 query_1        TRUE  1.154961e-42        98        910                52
## 410 query_1        TRUE  5.646062e-42       110        910                54
## 411 query_1        TRUE  2.362007e-40       111        910                53
## 412 query_1        TRUE  2.493838e-39       115        910                53
## 413 query_1        TRUE  9.876826e-38       157        910                59
## 414 query_1        TRUE  3.310412e-37       852        910               132
## 415 query_1        TRUE  1.719433e-35       138        910                54
## 416 query_1        TRUE  2.176755e-35       177        910                60
## 417 query_1        TRUE  6.354049e-33      1430        910               169
## 418 query_1        TRUE  1.848646e-31       526        910                95
## 419 query_1        TRUE  3.314956e-30       155        910                52
## 420 query_1        TRUE  9.453461e-29       194        910                56
## 421 query_1        TRUE  8.041589e-26       701        910               102
## 422 query_1        TRUE  4.395615e-15       589        910                75
## 423 query_1        TRUE  1.885947e-14      7123        910               420
## 424 query_1        TRUE  1.014714e-09       429        910                53
## 425 query_1        TRUE  9.112679e-08         7        910                 7
## 426 query_1        TRUE  5.897775e-06       183        910                27
## 427 query_1        TRUE  9.774368e-06        10        910                 7
## 428 query_1        TRUE  9.774368e-06        10        910                 7
## 429 query_1        TRUE  3.382430e-05       405        910                42
## 430 query_1        TRUE  5.986280e-05       230        910                29
## 431 query_1        TRUE  7.197754e-05        61        910                14
## 432 query_1        TRUE  1.142274e-04      1814        910               121
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## 435 query_1        TRUE  1.223380e-03         4        910                 4
## 436 query_1        TRUE  1.870389e-03        49        910                11
## 437 query_1        TRUE  5.945019e-03       110        910                16
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## 440 query_1        TRUE  2.954941e-02        26        910                 7
## 441 query_1        TRUE  3.237900e-02       126        910                16
## 442 query_1        TRUE  4.734864e-02       372        910                32
## 443 query_1        TRUE  7.681253e-10      3295        910               226
## 444 query_1        TRUE  1.263980e-08      9484        910               508
## 445 query_1        TRUE  2.646950e-07      6765        910               382
## 446 query_1        TRUE  4.520655e-07      5211        910               309
## 447 query_1        TRUE  7.011235e-07      4997        910               298
## 448 query_1        TRUE  1.661656e-06     10553        910               543
## 449 query_1        TRUE  1.822376e-06     14204        910               690
## 450 query_1        TRUE  1.822376e-06     14204        910               690
## 451 query_1        TRUE  3.012456e-06     15518        910               739
## 452 query_1        TRUE  3.059451e-06     15492        910               738
## 453 query_1        TRUE  3.200389e-06     15521        910               739
## 454 query_1        TRUE  3.268510e-06      3614        910               228
## 455 query_1        TRUE  3.952190e-06     12349        910               615
## 456 query_1        TRUE  4.262996e-06     13658        910               667
## 457 query_1        TRUE  5.035020e-06     10421        910               535
## 458 query_1        TRUE  5.890273e-06     15498        910               737
## 459 query_1        TRUE  7.468584e-06      4971        910               292
## 460 query_1        TRUE  9.004741e-06     13041        910               641
## 461 query_1        TRUE  1.551913e-05      9655        910               500
## 462 query_1        TRUE  1.685600e-05     15392        910               731
## 463 query_1        TRUE  1.781745e-05      9686        910               501
## 464 query_1        TRUE  2.616055e-05     11279        910               567
## 465 query_1        TRUE  2.616055e-05     11279        910               567
## 466 query_1        TRUE  6.672789e-05     10113        910               516
## 467 query_1        TRUE  7.677311e-05     13638        910               660
## 468 query_1        TRUE  1.588008e-04      5584        910               314
## 469 query_1        TRUE  1.777576e-04      7943        910               420
## 470 query_1        TRUE  1.909140e-04      9305        910               479
## 471 query_1        TRUE  1.917258e-04      7292        910               391
## 472 query_1        TRUE  2.027205e-04     10724        910               539
## 473 query_1        TRUE  2.344776e-04      9879        910               503
## 474 query_1        TRUE  2.422514e-04      6282        910               345
## 475 query_1        TRUE  3.156362e-04      2048        910               140
## 476 query_1        TRUE  3.643972e-04     14057        910               673
## 477 query_1        TRUE  3.817160e-04      8100        910               425
## 478 query_1        TRUE  5.081569e-04     11840        910               583
## 479 query_1        TRUE  6.254859e-04     15377        910               723
## 480 query_1        TRUE  6.450919e-04     12074        910               592
## 481 query_1        TRUE  6.996806e-04      7274        910               387
## 482 query_1        TRUE  7.285932e-04      4104        910               241
## 483 query_1        TRUE  7.336249e-04      9900        910               501
## 484 query_1        TRUE  7.336249e-04      9900        910               501
## 485 query_1        TRUE  8.375653e-04      4871        910               277
## 486 query_1        TRUE  9.230020e-04     10935        910               544
## 487 query_1        TRUE  9.621147e-04      5916        910               325
## 488 query_1        TRUE  1.548641e-03      9011        910               461
## 489 query_1        TRUE  1.681452e-03      4586        910               262
## 490 query_1        TRUE  1.823669e-03      6858        910               366
## 491 query_1        TRUE  1.942358e-03      5171        910               289
## 492 query_1        TRUE  1.942358e-03      5171        910               289
## 493 query_1        TRUE  1.942358e-03      5171        910               289
## 494 query_1        TRUE  1.975297e-03      6573        910               353
## 495 query_1        TRUE  2.048093e-03      2818        910               176
## 496 query_1        TRUE  2.301288e-03      8023        910               417
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## 498 query_1        TRUE  4.684694e-03      5674        910               310
## 499 query_1        TRUE  6.306465e-03      1338        910                97
## 500 query_1        TRUE  6.319437e-03     11635        910               568
## 501 query_1        TRUE  7.522892e-03      2079        910               136
## 502 query_1        TRUE  9.687174e-03     14106        910               667
## 503 query_1        TRUE  1.067006e-02      4552        910               256
## 504 query_1        TRUE  1.070321e-02     13039        910               624
## 505 query_1        TRUE  1.070321e-02     13039        910               624
## 506 query_1        TRUE  1.070321e-02     13039        910               624
## 507 query_1        TRUE  1.094972e-02      2746        910               169
## 508 query_1        TRUE  1.099368e-02      7099        910               372
## 509 query_1        TRUE  1.163534e-02      7080        910               371
## 510 query_1        TRUE  1.386145e-02     11470        910               559
## 511 query_1        TRUE  1.527436e-02     10591        910               522
## 512 query_1        TRUE  1.527436e-02     10591        910               522
## 513 query_1        TRUE  1.527436e-02     10591        910               522
## 514 query_1        TRUE  1.713783e-02      3090        910               185
## 515 query_1        TRUE  1.877035e-02      8292        910               423
## 516 query_1        TRUE  1.877035e-02      8292        910               423
## 517 query_1        TRUE  1.933349e-02      4031        910               230
## 518 query_1        TRUE  1.987933e-02       870        910                69
## 519 query_1        TRUE  2.188162e-02     12228        910               589
## 520 query_1        TRUE  2.631632e-02      4815        910               266
## 521 query_1        TRUE  3.305068e-02      7078        910               368
## 522 query_1        TRUE  3.707074e-02      8891        910               447
## 523 query_1        TRUE  3.721373e-02      8683        910               438
## 524 query_1        TRUE  3.786919e-02      7403        910               382
## 525 query_1        TRUE  4.283009e-02      1968        910               127
## 526 query_1        TRUE  4.501087e-02     15044        910               700
## 527 query_1        TRUE  4.734723e-02      3034        910               180
## 528 query_1        TRUE  4.783054e-02      2973        910               177
## 529 query_1        TRUE  4.836775e-02      6430        910               338
## 530 query_1        TRUE  1.987135e-08      3661        910               227
## 531 query_1        TRUE  1.811430e-05       174        910                24
## 532 query_1        TRUE  2.400904e-05       106        910                18
## 533 query_1        TRUE  3.767607e-05        41        910                11
## 534 query_1        TRUE  2.641333e-04       162        910                21
## 535 query_1        TRUE  5.712605e-04        53        910                11
## 536 query_1        TRUE  8.300878e-04        55        910                11
## 537 query_1        TRUE  7.301666e-03       173        910                19
## 538 query_1        TRUE  2.852221e-02        10        910                 4
## 539 query_1        TRUE  4.584493e-02        98        910                12
##       precision     recall              term_id source
## 1   0.003296703 1.00000000           CORUM:2900  CORUM
## 2   0.003296703 0.75000000           CORUM:2742  CORUM
## 3   0.002197802 1.00000000           CORUM:2868  CORUM
## 4   0.280219780 0.19721578           GO:0006955  GO:BP
## 5   0.362637363 0.15034169           GO:0002376  GO:BP
## 6   0.558241758 0.08238729           GO:0050896  GO:BP
## 7   0.084615385 0.55000000           GO:0050853  GO:BP
## 8   0.127472527 0.28501229           GO:0002443  GO:BP
## 9   0.212087912 0.15963606           GO:0006952  GO:BP
## 10  0.142857143 0.23550725           GO:0045087  GO:BP
## 11  0.104395604 0.34545455           GO:0002429  GO:BP
## 12  0.105494505 0.34042553           GO:0002768  GO:BP
## 13  0.104395604 0.34420290           GO:0002757  GO:BP
## 14  0.167032967 0.19387755           GO:0098542  GO:BP
## 15  0.124175824 0.26588235           GO:0002764  GO:BP
## 16  0.178021978 0.17685590           GO:0045321  GO:BP
## 17  0.196703297 0.16111611           GO:0051707  GO:BP
## 18  0.196703297 0.16082659           GO:0043207  GO:BP
## 19  0.143956044 0.21760797           GO:0002252  GO:BP
## 20  0.185714286 0.16799205           GO:0001775  GO:BP
## 21  0.197802198 0.15789474           GO:0009607  GO:BP
## 22  0.205494505 0.15265306           GO:0044419  GO:BP
## 23  0.274725275 0.12030799           GO:0009605  GO:BP
## 24  0.107692308 0.28908555           GO:0002253  GO:BP
## 25  0.167032967 0.17736289           GO:0002684  GO:BP
## 26  0.104395604 0.29320988           GO:0002449  GO:BP
## 27  0.130769231 0.22537879           GO:0050778  GO:BP
## 28  0.157142857 0.18499353           GO:0050776  GO:BP
## 29  0.091208791 0.34297521           GO:0050851  GO:BP
## 30  0.249450549 0.12283550           GO:0048584  GO:BP
## 31  0.156043956 0.18205128           GO:0046649  GO:BP
## 32  0.072527473 0.45517241           GO:0006911  GO:BP
## 33  0.204395604 0.14274751           GO:0002682  GO:BP
## 34  0.073626374 0.43790850           GO:0099024  GO:BP
## 35  0.065934066 0.51282051           GO:0006910  GO:BP
## 36  0.062637363 0.54807692           GO:0006958  GO:BP
## 37  0.093406593 0.30797101           GO:0042742  GO:BP
## 38  0.136263736 0.20064725           GO:0002694  GO:BP
## 39  0.382417582 0.09015544           GO:0007165  GO:BP
## 40  0.073626374 0.42138365           GO:0010324  GO:BP
## 41  0.137362637 0.19623234           GO:0009617  GO:BP
## 42  0.139560440 0.19213313           GO:0050865  GO:BP
## 43  0.063736264 0.49572650           GO:0002455  GO:BP
## 44  0.098901099 0.27190332           GO:0042113  GO:BP
## 45  0.081318681 0.34259259           GO:0050864  GO:BP
## 46  0.103296703 0.25268817           GO:0002250  GO:BP
## 47  0.063736264 0.46774194           GO:0006956  GO:BP
## 48  0.398901099 0.08511137           GO:0023052  GO:BP
## 49  0.121978022 0.20825516           GO:0051249  GO:BP
## 50  0.090109890 0.29078014           GO:0006909  GO:BP
## 51  0.400000000 0.08437645           GO:0007154  GO:BP
## 52  0.254945055 0.11005693           GO:0007166  GO:BP
## 53  0.107692308 0.22897196           GO:0002696  GO:BP
## 54  0.108791209 0.22347630           GO:0050867  GO:BP
## 55  0.325274725 0.09352291           GO:0048583  GO:BP
## 56  0.095604396 0.25513196           GO:0002460  GO:BP
## 57  0.073626374 0.34010152           GO:0019724  GO:BP
## 58  0.069230769 0.36627907           GO:0050871  GO:BP
## 59  0.072527473 0.34196891           GO:0016064  GO:BP
## 60  0.098901099 0.23560209           GO:0051251  GO:BP
## 61  0.075824176 0.31221719           GO:0006959  GO:BP
## 62  0.069230769 0.30882353           GO:0008037  GO:BP
## 63  0.420879121 0.07511277           GO:0048518  GO:BP
## 64  0.420879121 0.07484854           GO:0051716  GO:BP
## 65  0.292307692 0.09004739           GO:0006950  GO:BP
## 66  0.100000000 0.18346774           GO:0006897  GO:BP
## 67  0.381318681 0.07548401           GO:0048522  GO:BP
## 68  0.598901099 0.06160280           GO:0065007  GO:BP
## 69  0.570329670 0.06172693           GO:0050789  GO:BP
## 70  0.846153846 0.05193229           GO:0008150  GO:BP
## 71  0.528571429 0.06045752           GO:0050794  GO:BP
## 72  0.143956044 0.10421639           GO:0016192  GO:BP
## 73  0.138461538 0.10153102           GO:0016477  GO:BP
## 74  0.097802198 0.12258953           GO:0061024  GO:BP
## 75  0.142857143 0.09502924           GO:0048870  GO:BP
## 76  0.267032967 0.07151265           GO:0048731  GO:BP
## 77  0.098901099 0.11306533           GO:0032101  GO:BP
## 78  0.202197802 0.07893608           GO:0051239  GO:BP
## 79  0.096703297 0.11267606           GO:0022603  GO:BP
## 80  0.076923077 0.12962963           GO:0006954  GO:BP
## 81  0.046153846 0.19444444           GO:0002703  GO:BP
## 82  0.362637363 0.06308545           GO:0032501  GO:BP
## 83  0.061538462 0.14432990           GO:0032103  GO:BP
## 84  0.115384615 0.09713228           GO:0040011  GO:BP
## 85  0.131868132 0.09090909           GO:0051240  GO:BP
## 86  0.108791209 0.09900000           GO:0007155  GO:BP
## 87  0.246153846 0.07002188           GO:0048869  GO:BP
## 88  0.056043956 0.15000000           GO:0002697  GO:BP
## 89  0.250549451 0.06925881           GO:0006810  GO:BP
## 90  0.242857143 0.06956248           GO:0030154  GO:BP
## 91  0.257142857 0.06818182           GO:0051234  GO:BP
## 92  0.047252747 0.16666667           GO:0031349  GO:BP
## 93  0.097802198 0.10183066           GO:0048534  GO:BP
## 94  0.665934066 0.05180816           GO:0009987  GO:BP
## 95  0.052747253 0.15141956           GO:0050900  GO:BP
## 96  0.045054945 0.17226891           GO:0002699  GO:BP
## 97  0.216483516 0.07179300           GO:0048513  GO:BP
## 98  0.094505495 0.10274791           GO:0030097  GO:BP
## 99  0.308791209 0.06379115           GO:0048856  GO:BP
## 100 0.176923077 0.07695985           GO:0050793  GO:BP
## 101 0.035164835 0.20779221           GO:0001906  GO:BP
## 102 0.100000000 0.09795479           GO:0002520  GO:BP
## 103 0.040659341 0.17961165           GO:0002274  GO:BP
## 104 0.038461538 0.18617021           GO:0030595  GO:BP
## 105 0.069230769 0.11842105           GO:0031347  GO:BP
## 106 0.179120879 0.07501150           GO:0009653  GO:BP
## 107 0.271428571 0.06524036           GO:0007275  GO:BP
## 108 0.225274725 0.06904682           GO:0042221  GO:BP
## 109 0.119780220 0.08790323           GO:0009967  GO:BP
## 110 0.043956044 0.16064257           GO:0060326  GO:BP
## 111 0.038461538 0.17948718           GO:0097529  GO:BP
## 112 0.131868132 0.08362369           GO:0010647  GO:BP
## 113 0.062637363 0.12337662           GO:0006935  GO:BP
## 114 0.062637363 0.12311015           GO:0042330  GO:BP
## 115 0.069230769 0.11559633           GO:0002521  GO:BP
## 116 0.131868132 0.08333333           GO:0023056  GO:BP
## 117 0.161538462 0.07684266           GO:0035556  GO:BP
## 118 0.184615385 0.07313888           GO:0009966  GO:BP
## 119 0.076923077 0.10819165           GO:0001816  GO:BP
## 120 0.183516484 0.07289393           GO:0010033  GO:BP
## 121 0.012087912 0.73333333           GO:0002220  GO:BP
## 122 0.328571429 0.06092095           GO:0016043  GO:BP
## 123 0.010989011 0.83333333           GO:0002223  GO:BP
## 124 0.010989011 0.83333333           GO:1990858  GO:BP
## 125 0.010989011 0.83333333           GO:1990840  GO:BP
## 126 0.318681319 0.06128487           GO:0032502  GO:BP
## 127 0.021978022 0.30769231           GO:0043299  GO:BP
## 128 0.026373626 0.24742268           GO:0031341  GO:BP
## 129 0.027472527 0.23148148           GO:0001909  GO:BP
## 130 0.012087912 0.68750000           GO:0002758  GO:BP
## 131 0.041758242 0.15702479           GO:0045765  GO:BP
## 132 0.074725275 0.10608424           GO:0001817  GO:BP
## 133 0.041758242 0.15510204           GO:1901342  GO:BP
## 134 0.276923077 0.06298425           GO:0051179  GO:BP
## 135 0.069230769 0.10956522           GO:0010942  GO:BP
## 136 0.183516484 0.07118500           GO:0070887  GO:BP
## 137 0.054945055 0.12531328           GO:0001525  GO:BP
## 138 0.018681319 0.34693878           GO:0043300  GO:BP
## 139 0.201098901 0.06892655           GO:0023051  GO:BP
## 140 0.041758242 0.15139442           GO:0002366  GO:BP
## 141 0.075824176 0.10283159           GO:0098609  GO:BP
## 142 0.074725275 0.10334347           GO:0030155  GO:BP
## 143 0.200000000 0.06875708           GO:0010646  GO:BP
## 144 0.061538462 0.11522634           GO:0048514  GO:BP
## 145 0.041758242 0.15019763           GO:0002263  GO:BP
## 146 0.329670330 0.05935892           GO:0071840  GO:BP
## 147 0.018681319 0.32692308           GO:0002715  GO:BP
## 148 0.121978022 0.08084487           GO:0042592  GO:BP
## 149 0.082417582 0.09554140           GO:0030334  GO:BP
## 150 0.021978022 0.25974026           GO:0001910  GO:BP
## 151 0.023076923 0.23863636           GO:0002444  GO:BP
## 152 0.086813187 0.09164733           GO:0040012  GO:BP
## 153 0.017582418 0.32653061           GO:0042269  GO:BP
## 154 0.026373626 0.20689655           GO:0034341  GO:BP
## 155 0.045054945 0.13141026           GO:0070661  GO:BP
## 156 0.027472527 0.19531250           GO:0097530  GO:BP
## 157 0.064835165 0.10479574           GO:0001568  GO:BP
## 158 0.083516484 0.09212121           GO:2000145  GO:BP
## 159 0.019780220 0.27272727           GO:0031343  GO:BP
## 160 0.038461538 0.14583333           GO:0070663  GO:BP
## 161 0.053846154 0.11556604           GO:0045785  GO:BP
## 162 0.134065934 0.07544836           GO:0008283  GO:BP
## 163 0.019780220 0.26865672           GO:0002228  GO:BP
## 164 0.209890110 0.06529915           GO:0065008  GO:BP
## 165 0.027472527 0.18939394           GO:0002705  GO:BP
## 166 0.054945055 0.11286682           GO:0051345  GO:BP
## 167 0.065934066 0.10186757           GO:0001944  GO:BP
## 168 0.057142857 0.10970464           GO:0007186  GO:BP
## 169 0.029670330 0.17419355           GO:0071674  GO:BP
## 170 0.060439560 0.10597303           GO:0043068  GO:BP
## 171 0.120879121 0.07746479           GO:0010941  GO:BP
## 172 0.052747253 0.11347518           GO:0001819  GO:BP
## 173 0.052747253 0.11347518           GO:1903131  GO:BP
## 174 0.040659341 0.13357401           GO:0046651  GO:BP
## 175 0.084615385 0.08850575           GO:0000902  GO:BP
## 176 0.018681319 0.26562500           GO:0042267  GO:BP
## 177 0.079120879 0.09090909           GO:1902533  GO:BP
## 178 0.073626374 0.09396914           GO:0035239  GO:BP
## 179 0.029670330 0.16666667           GO:0002833  GO:BP
## 180 0.020879121 0.23170732           GO:0002275  GO:BP
## 181 0.040659341 0.13074205           GO:0032943  GO:BP
## 182 0.014285714 0.36111111           GO:0002717  GO:BP
## 183 0.072527473 0.09375000           GO:0051336  GO:BP
## 184 0.020879121 0.22891566           GO:0030593  GO:BP
## 185 0.048351648 0.11609499           GO:0030099  GO:BP
## 186 0.054945055 0.10775862           GO:0098771  GO:BP
## 187 0.023076923 0.20388350           GO:1990266  GO:BP
## 188 0.134065934 0.07287933           GO:0008219  GO:BP
## 189 0.041758242 0.12624585           GO:0002831  GO:BP
## 190 0.109890110 0.07806401           GO:0043067  GO:BP
## 191 0.053846154 0.10792952           GO:0055080  GO:BP
## 192 0.023076923 0.20192308           GO:0071621  GO:BP
## 193 0.037362637 0.13545817           GO:0032496  GO:BP
## 194 0.054945055 0.10638298           GO:0050801  GO:BP
## 195 0.014285714 0.34210526           GO:0036230  GO:BP
## 196 0.034065934 0.14351852           GO:0050670  GO:BP
## 197 0.038461538 0.13157895           GO:0002237  GO:BP
## 198 0.102197802 0.07955518           GO:0051094  GO:BP
## 199 0.040659341 0.12627986           GO:0042060  GO:BP
## 200 0.028571429 0.16352201           GO:0002706  GO:BP
## 201 0.109890110 0.07727975           GO:1902531  GO:BP
## 202 0.045054945 0.11747851           GO:0007159  GO:BP
## 203 0.074725275 0.08994709           GO:0034097  GO:BP
## 204 0.048351648 0.11224490           GO:0006873  GO:BP
## 205 0.048351648 0.11224490           GO:0055065  GO:BP
## 206 0.064835165 0.09593496           GO:0000165  GO:BP
## 207 0.034065934 0.14090909           GO:0032944  GO:BP
## 208 0.048351648 0.11139241           GO:0009611  GO:BP
## 209 0.104395604 0.07799672           GO:2000026  GO:BP
## 210 0.053846154 0.10470085           GO:0030335  GO:BP
## 211 0.123076923 0.07353907           GO:0012501  GO:BP
## 212 0.027472527 0.16339869           GO:0019722  GO:BP
## 213 0.013186813 0.35294118           GO:0045954  GO:BP
## 214 0.016483516 0.26785714           GO:0002886  GO:BP
## 215 0.054945055 0.10245902           GO:0042110  GO:BP
## 216 0.007692308 0.77777778           GO:0010919  GO:BP
## 217 0.142857143 0.06963042           GO:0071310  GO:BP
## 218 0.103296703 0.07723911           GO:0044093  GO:BP
## 219 0.028571429 0.15476190           GO:0007204  GO:BP
## 220 0.083516484 0.08351648           GO:0072359  GO:BP
## 221 0.046153846 0.11111111           GO:0030003  GO:BP
## 222 0.056043956 0.10000000           GO:0043065  GO:BP
## 223 0.024175824 0.17600000           GO:0045089  GO:BP
## 224 0.053846154 0.10123967           GO:2000147  GO:BP
## 225 0.031868132 0.13875598           GO:0002573  GO:BP
## 226 0.059340659 0.09591474           GO:0043408  GO:BP
## 227 0.030769231 0.14213198           GO:0045088  GO:BP
## 228 0.025274725 0.16428571           GO:1904018  GO:BP
## 229 0.025274725 0.16428571           GO:0045766  GO:BP
## 230 0.037362637 0.12318841           GO:0022409  GO:BP
## 231 0.073626374 0.08622909           GO:0046903  GO:BP
## 232 0.040659341 0.11635220           GO:0006875  GO:BP
## 233 0.048351648 0.10526316           GO:0022407  GO:BP
## 234 0.012087912 0.35483871           GO:0042119  GO:BP
## 235 0.109890110 0.07401925           GO:0042127  GO:BP
## 236 0.080219780 0.08267271           GO:0035295  GO:BP
## 237 0.032967033 0.13157895           GO:0019932  GO:BP
## 238 0.006593407 0.85714286           GO:0060732  GO:BP
## 239 0.045054945 0.10817942           GO:0002683  GO:BP
## 240 0.103296703 0.07496013           GO:0042981  GO:BP
## 241 0.038461538 0.11824324           GO:0050727  GO:BP
## 242 0.053846154 0.09800000           GO:0040017  GO:BP
## 243 0.015384615 0.25454545           GO:0001912  GO:BP
## 244 0.023076923 0.16935484           GO:0050729  GO:BP
## 245 0.096703297 0.07625650           GO:0080134  GO:BP
## 246 0.018681319 0.20481928           GO:0042100  GO:BP
## 247 0.046153846 0.10526316           GO:0043410  GO:BP
## 248 0.068131868 0.08720113           GO:0045937  GO:BP
## 249 0.068131868 0.08720113           GO:0010562  GO:BP
## 250 0.073626374 0.08375000           GO:0045597  GO:BP
## 251 0.145054945 0.06666667           GO:0065009  GO:BP
## 252 0.136263736 0.06783370           GO:0048468  GO:BP
## 253 0.081318681 0.08026030           GO:0048646  GO:BP
## 254 0.058241758 0.09137931           GO:0033993  GO:BP
## 255 0.080219780 0.07995619           GO:0051241  GO:BP
## 256 0.038461538 0.11290323           GO:0048872  GO:BP
## 257 0.014285714 0.25490196           GO:0002218  GO:BP
## 258 0.114285714 0.07079646           GO:0006915  GO:BP
## 259 0.107692308 0.07211185           GO:0045595  GO:BP
## 260 0.006593407 0.75000000           GO:0002576  GO:BP
## 261 0.010989011 0.34482759           GO:0043302  GO:BP
## 262 0.039560440 0.11009174           GO:0050863  GO:BP
## 263 0.013186813 0.27272727           GO:0002548  GO:BP
## 264 0.071428571 0.08280255           GO:0008284  GO:BP
## 265 0.020879121 0.17117117           GO:0002708  GO:BP
## 266 0.016483516 0.21126761           GO:0034109  GO:BP
## 267 0.035164835 0.11636364           GO:0072507  GO:BP
## 268 0.047252747 0.09885057           GO:0048871  GO:BP
## 269 0.073626374 0.08121212           GO:0048878  GO:BP
## 270 0.032967033 0.12048193           GO:0072503  GO:BP
## 271 0.076923077 0.07954545           GO:0043085  GO:BP
## 272 0.008791209 0.44444444           GO:0002495  GO:BP
## 273 0.268131868 0.05656004           GO:0048519  GO:BP
## 274 0.024175824 0.14765101           GO:0070665  GO:BP
## 275 0.063736264 0.08516887           GO:0071345  GO:BP
## 276 0.008791209 0.42105263           GO:0002504  GO:BP
## 277 0.094505495 0.07300509           GO:1901700  GO:BP
## 278 0.014285714 0.22807018           GO:0048002  GO:BP
## 279 0.054945055 0.08928571           GO:0051046  GO:BP
## 280 0.007692308 0.50000000           GO:0019886  GO:BP
## 281 0.007692308 0.50000000           GO:0002283  GO:BP
## 282 0.052747253 0.09056604           GO:0055082  GO:BP
## 283 0.037362637 0.10658307           GO:1903037  GO:BP
## 284 0.008791209 0.40000000           GO:0035821  GO:BP
## 285 0.041758242 0.10026385           GO:0030098  GO:BP
## 286 0.059340659 0.08530806           GO:0000904  GO:BP
## 287 0.082417582 0.07515030           GO:0010628  GO:BP
## 288 0.223076923 0.17667537           GO:0005615  GO:CC
## 289 0.239560440 0.16220238           GO:0005576  GO:CC
## 290 0.139560440 0.26569038           GO:0009897  GO:CC
## 291 0.384615385 0.10080645           GO:0005886  GO:CC
## 292 0.157142857 0.21471471           GO:0098552  GO:CC
## 293 0.404395604 0.09674027           GO:0071944  GO:CC
## 294 0.172527473 0.18735084           GO:0009986  GO:CC
## 295 0.068131868 0.60784314           GO:0019814  GO:CC
## 296 0.064835165 0.60204082           GO:0042571  GO:CC
## 297 0.449450549 0.07683637           GO:0016020  GO:CC
## 298 0.763736264 0.05489731           GO:0110165  GO:CC
## 299 0.845054945 0.05211439           GO:0005575  GO:CC
## 300 0.103296703 0.09926082           GO:0031226  GO:CC
## 301 0.095604396 0.09819413           GO:0005887  GO:CC
## 302 0.045054945 0.14041096           GO:0043235  GO:CC
## 303 0.138461538 0.07585792           GO:0031224  GO:CC
## 304 0.128571429 0.07528958           GO:0016021  GO:CC
## 305 0.082417582 0.08342603           GO:0098590  GO:CC
## 306 0.006593407 0.75000000           GO:0042613  GO:CC
## 307 0.043956044 0.10282776           GO:0005764  GO:CC
## 308 0.043956044 0.10282776           GO:0000323  GO:CC
## 309 0.037362637 0.10862620           GO:0045121  GO:CC
## 310 0.037362637 0.10828025           GO:0098857  GO:CC
## 311 0.065934066 0.59405941           GO:0034987  GO:MF
## 312 0.076923077 0.44871795           GO:0003823  GO:MF
## 313 0.152747253 0.11951849           GO:0005102  GO:MF
## 314 0.468131868 0.05914202           GO:0005515  GO:MF
## 315 0.084615385 0.11919505           GO:0060089  GO:MF
## 316 0.084615385 0.11919505           GO:0038023  GO:MF
## 317 0.071428571 0.12621359           GO:0004888  GO:MF
## 318 0.014285714 0.68421053           GO:0023023  GO:MF
## 319 0.547252747 0.05410691           GO:0005488  GO:MF
## 320 0.028571429 0.23008850           GO:0140375  GO:MF
## 321 0.771428571 0.04856787           GO:0003674  GO:MF
## 322 0.007692308 0.77777778           GO:0032394  GO:MF
## 323 0.006593407 0.85714286           GO:0023024  GO:MF
## 324 0.006593407 0.66666667           GO:0023026  GO:MF
## 325 0.005494505 0.83333333           GO:0031726  GO:MF
## 326 0.023076923 0.28767123           HP:0001287     HP
## 327 0.024175824 0.22448980           HP:0011450     HP
## 328 0.024175824 0.21568627           HP:0032158     HP
## 329 0.017582418 0.25396825           HP:0002633     HP
## 330 0.040659341 0.11212121           HP:0001945     HP
## 331 0.082417582 0.08021390           HP:0025142     HP
## 332 0.047252747 0.10093897           HP:0004370     HP
## 333 0.020879121 0.16379310           HP:0000988     HP
## 334 0.043956044 0.09900990           HP:0001744     HP
## 335 0.037362637 0.10461538           HP:0012378     HP
## 336 0.005494505 0.71428571           HP:0004444     HP
## 337 0.049450549 0.08604207           HP:0001743     HP
## 338 0.015384615 0.17500000           HP:0410240     HP
## 339 0.017582418 0.15533981           HP:0025337     HP
## 340 0.026373626 0.11650485           HP:0002733     HP
## 341 0.058241758 0.07993967           HP:0012531     HP
## 342 0.024175824 0.12290503           HP:0002960     HP
## 343 0.047252747 0.08651911           HP:0025408     HP
## 344 0.052747253 0.08261618           HP:0011032     HP
## 345 0.031868132 0.10211268           HP:0002027     HP
## 346 0.010989011 0.22727273           HP:0100658     HP
## 347 0.012087912 0.20370370           HP:0002720     HP
## 348 0.014285714 0.17333333           HP:0410243     HP
## 349 0.010989011 0.22222222           HP:0002850     HP
## 350 0.024175824 0.11764706           HP:0001369     HP
## 351 0.016483516 0.15151515           HP:0000509     HP
## 352 0.108791209 0.06428571           HP:0000006     HP
## 353 0.054945055 0.07886435           HP:0100763     HP
## 354 0.030769231 0.10108303           HP:0002315     HP
## 355 0.079120879 0.06990291           HP:0002088     HP
## 356 0.018681319 0.13600000           HP:0002110     HP
## 357 0.091208791 0.06688155           HP:0001871     HP
## 358 0.007692308 0.31818182           HP:0004432     HP
## 359 0.024175824 0.11398964           HP:0002716     HP
## 360 0.040659341 0.08767773           HP:0011122     HP
## 361 0.023076923 0.11538462           HP:0100533     HP
## 362 0.018681319 0.13178295           HP:0011895     HP
## 363 0.018681319 0.13178295           HP:0001878     HP
## 364 0.030769231 0.33333333           KEGG:04640   KEGG
## 365 0.018681319 0.34693878           KEGG:05332   KEGG
## 366 0.017582418 0.32653061           KEGG:05330   KEGG
## 367 0.017582418 0.30188679           KEGG:04940   KEGG
## 368 0.016483516 0.30000000           KEGG:05320   KEGG
## 369 0.010989011 0.47619048           KEGG:05310   KEGG
## 370 0.384615385 0.05448319           KEGG:00000   KEGG
## 371 0.027472527 0.14705882           KEGG:04062   KEGG
## 372 0.017582418 0.21333333           KEGG:04612   KEGG
## 373 0.013186813 0.28571429           KEGG:04672   KEGG
## 374 0.016483516 0.22058824           KEGG:05140   KEGG
## 375 0.025274725 0.14935065           KEGG:04145   KEGG
## 376 0.030769231 0.12785388           KEGG:04060   KEGG
## 377 0.019780220 0.17647059           KEGG:04650   KEGG
## 378 0.025274725 0.14465409           KEGG:05152   KEGG
## 379 0.016483516 0.20000000           KEGG:04662   KEGG
## 380 0.016483516 0.20000000           KEGG:04061   KEGG
## 381 0.013186813 0.25000000           KEGG:05150   KEGG
## 382 0.015384615 0.20289855           KEGG:05416   KEGG
## 383 0.021978022 0.14814815           KEGG:04514   KEGG
## 384 0.013186813 0.22641509           KEGG:05144   KEGG
## 385 0.023076923 0.13125000           KEGG:05202   KEGG
## 386 0.017582418 0.15094340           KEGG:05145   KEGG
## 387 0.009890110 0.25714286           KEGG:05340   KEGG
## 388 0.025274725 0.11386139           KEGG:05169   KEGG
## 389 0.014285714 0.16883117           KEGG:05323   KEGG
## 390 0.016483516 0.14563107           KEGG:04625   KEGG
## 391 0.008791209 0.24242424           KEGG:05143   KEGG
## 392 0.016483516 0.12396694           KEGG:04380   KEGG
## 393 0.010989011 0.16393443           KEGG:05321   KEGG
## 394 0.013186813 0.14117647           KEGG:04658   KEGG
## 395 0.021978022 0.10000000           KEGG:04014   KEGG
## 396 0.007692308 0.25000000 MIRNA:mmu-miR-27b-3p  MIRNA
## 397 0.063736264 0.56310680    REAC:R-MMU-983695   REAC
## 398 0.061538462 0.58947368   REAC:R-MMU-2029481   REAC
## 399 0.062637363 0.56435644   REAC:R-MMU-2168880   REAC
## 400 0.079120879 0.39779006    REAC:R-MMU-198933   REAC
## 401 0.058241758 0.61627907   REAC:R-MMU-5690714   REAC
## 402 0.063736264 0.52727273   REAC:R-MMU-2173782   REAC
## 403 0.059340659 0.56250000   REAC:R-MMU-2730905   REAC
## 404 0.060439560 0.53921569   REAC:R-MMU-2029485   REAC
## 405 0.057142857 0.58426966    REAC:R-MMU-173623   REAC
## 406 0.075824176 0.38547486    REAC:R-MMU-202733   REAC
## 407 0.057142857 0.56521739    REAC:R-MMU-166786   REAC
## 408 0.060439560 0.50925926   REAC:R-MMU-2871809   REAC
## 409 0.057142857 0.53061224    REAC:R-MMU-166663   REAC
## 410 0.059340659 0.49090909   REAC:R-MMU-2871796   REAC
## 411 0.058241758 0.47747748    REAC:R-MMU-977606   REAC
## 412 0.058241758 0.46086957    REAC:R-MMU-166658   REAC
## 413 0.064835165 0.37579618   REAC:R-MMU-2029480   REAC
## 414 0.145054945 0.15492958    REAC:R-MMU-168249   REAC
## 415 0.059340659 0.39130435   REAC:R-MMU-2029482   REAC
## 416 0.065934066 0.33898305    REAC:R-MMU-983705   REAC
## 417 0.185714286 0.11818182    REAC:R-MMU-168256   REAC
## 418 0.104395604 0.18060837    REAC:R-MMU-109582   REAC
## 419 0.057142857 0.33548387   REAC:R-MMU-2871837   REAC
## 420 0.061538462 0.28865979   REAC:R-MMU-2454202   REAC
## 421 0.112087912 0.14550642   REAC:R-MMU-1280218   REAC
## 422 0.082417582 0.12733447   REAC:R-MMU-5653656   REAC
## 423 0.461538462 0.05896392         REAC:0000000   REAC
## 424 0.058241758 0.12354312   REAC:R-MMU-6798695   REAC
## 425 0.007692308 1.00000000   REAC:R-MMU-1247673   REAC
## 426 0.029670330 0.14754098    REAC:R-MMU-373076   REAC
## 427 0.007692308 0.70000000   REAC:R-MMU-1237044   REAC
## 428 0.007692308 0.70000000   REAC:R-MMU-1480926   REAC
## 429 0.046153846 0.10370370    REAC:R-MMU-372790   REAC
## 430 0.031868132 0.12608696    REAC:R-MMU-500792   REAC
## 431 0.015384615 0.22950820   REAC:R-MMU-2172127   REAC
## 432 0.132967033 0.06670342    REAC:R-MMU-162582   REAC
## 433 0.012087912 0.27500000    REAC:R-MMU-380108   REAC
## 434 0.041758242 0.09793814    REAC:R-MMU-388396   REAC
## 435 0.004395604 1.00000000   REAC:R-MMU-6799990   REAC
## 436 0.012087912 0.22448980   REAC:R-MMU-2424491   REAC
## 437 0.017582418 0.14545455    REAC:R-MMU-375276   REAC
## 438 0.003296703 1.00000000   REAC:R-MMU-5660526   REAC
## 439 0.003296703 1.00000000   REAC:R-MMU-5661231   REAC
## 440 0.007692308 0.26923077   REAC:R-MMU-6803157   REAC
## 441 0.017582418 0.12698413   REAC:R-MMU-8980692   REAC
## 442 0.035164835 0.08602151   REAC:R-MMU-9012999   REAC
## 443 0.248351648 0.06858877            TF:M01172     TF
## 444 0.558241758 0.05356390            TF:M00646     TF
## 445 0.419780220 0.05646711            TF:M00749     TF
## 446 0.339560440 0.05929764          TF:M01808_1     TF
## 447 0.327472527 0.05963578            TF:M10270     TF
## 448 0.596703297 0.05145456            TF:M01808     TF
## 449 0.758241758 0.04857787            TF:M02031     TF
## 450 0.758241758 0.04857787            TF:M01266     TF
## 451 0.812087912 0.04762212            TF:M03851     TF
## 452 0.810989011 0.04763749          TF:M03851_1     TF
## 453 0.812087912 0.04761291            TF:M00000     TF
## 454 0.250549451 0.06308799            TF:M00658     TF
## 455 0.675824176 0.04980160            TF:M04624     TF
## 456 0.732967033 0.04883585            TF:M03848     TF
## 457 0.587912088 0.05133864            TF:M07107     TF
## 458 0.809890110 0.04755452            TF:M01160     TF
## 459 0.320879121 0.05874070          TF:M07107_1     TF
## 460 0.704395604 0.04915267            TF:M03803     TF
## 461 0.549450549 0.05178664            TF:M03541     TF
## 462 0.803296703 0.04749220          TF:M01160_1     TF
## 463 0.550549451 0.05172414            TF:M00704     TF
## 464 0.623076923 0.05027041          TF:M02031_1     TF
## 465 0.623076923 0.05027041          TF:M01266_1     TF
## 466 0.567032967 0.05102344            TF:M04636     TF
## 467 0.725274725 0.04839419            TF:M02027     TF
## 468 0.345054945 0.05623209            TF:M00221     TF
## 469 0.461538462 0.05287675            TF:M01733     TF
## 470 0.526373626 0.05147770            TF:M08793     TF
## 471 0.429670330 0.05362041          TF:M01835_1     TF
## 472 0.592307692 0.05026110            TF:M10285     TF
## 473 0.552747253 0.05091608          TF:M03848_1     TF
## 474 0.379120879 0.05491882            TF:M10218     TF
## 475 0.153846154 0.06835938            TF:M09710     TF
## 476 0.739560440 0.04787650            TF:M02941     TF
## 477 0.467032967 0.05246914            TF:M00655     TF
## 478 0.640659341 0.04923986            TF:M01835     TF
## 479 0.794505495 0.04701827            TF:M01822     TF
## 480 0.650549451 0.04903098            TF:M02895     TF
## 481 0.425274725 0.05320319            TF:M10281     TF
## 482 0.264835165 0.05872320          TF:M00646_1     TF
## 483 0.550549451 0.05060606          TF:M02101_1     TF
## 484 0.550549451 0.05060606            TF:M02101     TF
## 485 0.304395604 0.05686717            TF:M10368     TF
## 486 0.597802198 0.04974851          TF:M02941_1     TF
## 487 0.357142857 0.05493577          TF:M10285_1     TF
## 488 0.506593407 0.05115969            TF:M01020     TF
## 489 0.287912088 0.05713040            TF:M03804     TF
## 490 0.402197802 0.05336833            TF:M03577     TF
## 491 0.317582418 0.05588861          TF:M02084_1     TF
## 492 0.317582418 0.05588861          TF:M00271_1     TF
## 493 0.317582418 0.05588861          TF:M00751_1     TF
## 494 0.387912088 0.05370455            TF:M10395     TF
## 495 0.193406593 0.06245564          TF:M01733_1     TF
## 496 0.458241758 0.05197557            TF:M02006     TF
## 497 0.362637363 0.05407177            TF:M07429     TF
## 498 0.340659341 0.05463518            TF:M00339     TF
## 499 0.106593407 0.07249626            TF:M07224     TF
## 500 0.624175824 0.04881822            TF:M03819     TF
## 501 0.149450549 0.06541607          TF:M00192_1     TF
## 502 0.732967033 0.04728484            TF:M00378     TF
## 503 0.281318681 0.05623902            TF:M10273     TF
## 504 0.685714286 0.04785643            TF:M01281     TF
## 505 0.685714286 0.04785643            TF:M01886     TF
## 506 0.685714286 0.04785643            TF:M03555     TF
## 507 0.185714286 0.06154406          TF:M07461_1     TF
## 508 0.408791209 0.05240175            TF:M03841     TF
## 509 0.407692308 0.05240113            TF:M00072     TF
## 510 0.614285714 0.04873583          TF:M00378_1     TF
## 511 0.573626374 0.04928713            TF:M02084     TF
## 512 0.573626374 0.04928713            TF:M00271     TF
## 513 0.573626374 0.04928713            TF:M00751     TF
## 514 0.203296703 0.05987055            TF:M10353     TF
## 515 0.464835165 0.05101302            TF:M01207     TF
## 516 0.464835165 0.05101302            TF:M07252     TF
## 517 0.252747253 0.05705780            TF:M00701     TF
## 518 0.075824176 0.07931034          TF:M00701_1     TF
## 519 0.647252747 0.04816814            TF:M02116     TF
## 520 0.292307692 0.05524403            TF:M00084     TF
## 521 0.404395604 0.05199209            TF:M00192     TF
## 522 0.491208791 0.05027556          TF:M03580_1     TF
## 523 0.481318681 0.05044340            TF:M08888     TF
## 524 0.419780220 0.05160070            TF:M00733     TF
## 525 0.139560440 0.06453252            TF:M00971     TF
## 526 0.769230769 0.04653018          TF:M01822_1     TF
## 527 0.197802198 0.05932762          TF:M08888_1     TF
## 528 0.194505495 0.05953582            TF:M02852     TF
## 529 0.371428571 0.05256610            TF:M00033     TF
## 530 0.249450549 0.06200492            WP:000000     WP
## 531 0.026373626 0.13793103            WP:WP1396     WP
## 532 0.019780220 0.16981132             WP:WP189     WP
## 533 0.012087912 0.26829268            WP:WP3626     WP
## 534 0.023076923 0.12962963            WP:WP2292     WP
## 535 0.012087912 0.20754717            WP:WP3632     WP
## 536 0.012087912 0.20000000            WP:WP3625     WP
## 537 0.020879121 0.10982659              WP:WP85     WP
## 538 0.004395604 0.40000000            WP:WP2271     WP
## 539 0.013186813 0.12244898             WP:WP373     WP
##                                                                                                                     term_name
## 1                                                                                PLC-gamma-2-Lab-Blnk complex, BCR stimulated
## 2                                                                                                Gata2-Tal1-Tcf3-Lmo2 complex
## 3                                                                                               TEAD3-YAP DNA-protein complex
## 4                                                                                                             immune response
## 5                                                                                                       immune system process
## 6                                                                                                        response to stimulus
## 7                                                                                           B cell receptor signaling pathway
## 8                                                                                                 leukocyte mediated immunity
## 9                                                                                                            defense response
## 10                                                                                                     innate immune response
## 11                                                         immune response-activating cell surface receptor signaling pathway
## 12                                                         immune response-regulating cell surface receptor signaling pathway
## 13                                                                             immune response-activating signal transduction
## 14                                                                                         defense response to other organism
## 15                                                                               immune response-regulating signaling pathway
## 16                                                                                                       leukocyte activation
## 17                                                                                                 response to other organism
## 18                                                                                       response to external biotic stimulus
## 19                                                                                                    immune effector process
## 20                                                                                                            cell activation
## 21                                                                                                response to biotic stimulus
## 22                                                  biological process involved in interspecies interaction between organisms
## 23                                                                                              response to external stimulus
## 24                                                                                              activation of immune response
## 25                                                                               positive regulation of immune system process
## 26                                                                                               lymphocyte mediated immunity
## 27                                                                                     positive regulation of immune response
## 28                                                                                              regulation of immune response
## 29                                                                                antigen receptor-mediated signaling pathway
## 30                                                                                positive regulation of response to stimulus
## 31                                                                                                      lymphocyte activation
## 32                                                                                                   phagocytosis, engulfment
## 33                                                                                        regulation of immune system process
## 34                                                                                               plasma membrane invagination
## 35                                                                                                  phagocytosis, recognition
## 36                                                                                   complement activation, classical pathway
## 37                                                                                              defense response to bacterium
## 38                                                                                         regulation of leukocyte activation
## 39                                                                                                        signal transduction
## 40                                                                                                      membrane invagination
## 41                                                                                                      response to bacterium
## 42                                                                                              regulation of cell activation
## 43                                                             humoral immune response mediated by circulating immunoglobulin
## 44                                                                                                          B cell activation
## 45                                                                                            regulation of B cell activation
## 46                                                                                                   adaptive immune response
## 47                                                                                                      complement activation
## 48                                                                                                                  signaling
## 49                                                                                        regulation of lymphocyte activation
## 50                                                                                                               phagocytosis
## 51                                                                                                         cell communication
## 52                                                                                    cell surface receptor signaling pathway
## 53                                                                                positive regulation of leukocyte activation
## 54                                                                                     positive regulation of cell activation
## 55                                                                                         regulation of response to stimulus
## 56  adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains
## 57                                                                                                   B cell mediated immunity
## 58                                                                                   positive regulation of B cell activation
## 59                                                                                    immunoglobulin mediated immune response
## 60                                                                               positive regulation of lymphocyte activation
## 61                                                                                                    humoral immune response
## 62                                                                                                           cell recognition
## 63                                                                                  positive regulation of biological process
## 64                                                                                              cellular response to stimulus
## 65                                                                                                         response to stress
## 66                                                                                                                endocytosis
## 67                                                                                    positive regulation of cellular process
## 68                                                                                                      biological regulation
## 69                                                                                           regulation of biological process
## 70                                                                                                         biological_process
## 71                                                                                             regulation of cellular process
## 72                                                                                                 vesicle-mediated transport
## 73                                                                                                             cell migration
## 74                                                                                                      membrane organization
## 75                                                                                                              cell motility
## 76                                                                                                         system development
## 77                                                                                regulation of response to external stimulus
## 78                                                                             regulation of multicellular organismal process
## 79                                                                           regulation of anatomical structure morphogenesis
## 80                                                                                                      inflammatory response
## 81                                                                                  regulation of leukocyte mediated immunity
## 82                                                                                           multicellular organismal process
## 83                                                                       positive regulation of response to external stimulus
## 84                                                                                                                 locomotion
## 85                                                                    positive regulation of multicellular organismal process
## 86                                                                                                              cell adhesion
## 87                                                                                             cellular developmental process
## 88                                                                                      regulation of immune effector process
## 89                                                                                                                  transport
## 90                                                                                                       cell differentiation
## 91                                                                                              establishment of localization
## 92                                                                                    positive regulation of defense response
## 93                                                                                hematopoietic or lymphoid organ development
## 94                                                                                                           cellular process
## 95                                                                                                        leukocyte migration
## 96                                                                             positive regulation of immune effector process
## 97                                                                                                   animal organ development
## 98                                                                                                                hemopoiesis
## 99                                                                                           anatomical structure development
## 100                                                                                       regulation of developmental process
## 101                                                                                                              cell killing
## 102                                                                                                 immune system development
## 103                                                                                              myeloid leukocyte activation
## 104                                                                                                      leukocyte chemotaxis
## 105                                                                                            regulation of defense response
## 106                                                                                        anatomical structure morphogenesis
## 107                                                                                        multicellular organism development
## 108                                                                                                      response to chemical
## 109                                                                                positive regulation of signal transduction
## 110                                                                                                           cell chemotaxis
## 111                                                                                               myeloid leukocyte migration
## 112                                                                                 positive regulation of cell communication
## 113                                                                                                                chemotaxis
## 114                                                                                                                     taxis
## 115                                                                                                 leukocyte differentiation
## 116                                                                                          positive regulation of signaling
## 117                                                                                         intracellular signal transduction
## 118                                                                                         regulation of signal transduction
## 119                                                                                                       cytokine production
## 120                                                                                             response to organic substance
## 121                                                 innate immune response activating cell surface receptor signaling pathway
## 122                                                                                           cellular component organization
## 123                                                                      stimulatory C-type lectin receptor signaling pathway
## 124                                                                                               cellular response to lectin
## 125                                                                                                        response to lectin
## 126                                                                                                     developmental process
## 127                                                                                                   leukocyte degranulation
## 128                                                                                                regulation of cell killing
## 129                                                                                           leukocyte mediated cytotoxicity
## 130                                                                     innate immune response-activating signal transduction
## 131                                                                                                regulation of angiogenesis
## 132                                                                                         regulation of cytokine production
## 133                                                                                     regulation of vasculature development
## 134                                                                                                              localization
## 135                                                                                         positive regulation of cell death
## 136                                                                                    cellular response to chemical stimulus
## 137                                                                                                              angiogenesis
## 138                                                                                     regulation of leukocyte degranulation
## 139                                                                                                   regulation of signaling
## 140                                                                          leukocyte activation involved in immune response
## 141                                                                                                        cell-cell adhesion
## 142                                                                                               regulation of cell adhesion
## 143                                                                                          regulation of cell communication
## 144                                                                                                blood vessel morphogenesis
## 145                                                                               cell activation involved in immune response
## 146                                                                             cellular component organization or biogenesis
## 147                                                                       regulation of natural killer cell mediated immunity
## 148                                                                                                       homeostatic process
## 149                                                                                              regulation of cell migration
## 150                                                                             regulation of leukocyte mediated cytotoxicity
## 151                                                                                       myeloid leukocyte mediated immunity
## 152                                                                                                  regulation of locomotion
## 153                                                                   regulation of natural killer cell mediated cytotoxicity
## 154                                                                                              response to interferon-gamma
## 155                                                                                                   leukocyte proliferation
## 156                                                                                                     granulocyte migration
## 157                                                                                                  blood vessel development
## 158                                                                                               regulation of cell motility
## 159                                                                                       positive regulation of cell killing
## 160                                                                                     regulation of leukocyte proliferation
## 161                                                                                      positive regulation of cell adhesion
## 162                                                                                             cell population proliferation
## 163                                                                                     natural killer cell mediated immunity
## 164                                                                                          regulation of biological quality
## 165                                                                        positive regulation of leukocyte mediated immunity
## 166                                                                                 positive regulation of hydrolase activity
## 167                                                                                                   vasculature development
## 168                                                                              G protein-coupled receptor signaling pathway
## 169                                                                                                mononuclear cell migration
## 170                                                                              positive regulation of programmed cell death
## 171                                                                                                  regulation of cell death
## 172                                                                                positive regulation of cytokine production
## 173                                                                                          mononuclear cell differentiation
## 174                                                                                                  lymphocyte proliferation
## 175                                                                                                        cell morphogenesis
## 176                                                                                 natural killer cell mediated cytotoxicity
## 177                                                                  positive regulation of intracellular signal transduction
## 178                                                                                                        tube morphogenesis
## 179                                                                        positive regulation of response to biotic stimulus
## 180                                                                       myeloid cell activation involved in immune response
## 181                                                                                            mononuclear cell proliferation
## 182                                                              positive regulation of natural killer cell mediated immunity
## 183                                                                                          regulation of hydrolase activity
## 184                                                                                                     neutrophil chemotaxis
## 185                                                                                              myeloid cell differentiation
## 186                                                                                                 inorganic ion homeostasis
## 187                                                                                                      neutrophil migration
## 188                                                                                                                cell death
## 189                                                                                 regulation of response to biotic stimulus
## 190                                                                                       regulation of programmed cell death
## 191                                                                                                        cation homeostasis
## 192                                                                                                    granulocyte chemotaxis
## 193                                                                                            response to lipopolysaccharide
## 194                                                                                                           ion homeostasis
## 195                                                                                                    granulocyte activation
## 196                                                                                    regulation of lymphocyte proliferation
## 197                                                                                  response to molecule of bacterial origin
## 198                                                                              positive regulation of developmental process
## 199                                                                                                             wound healing
## 200                                                                                regulation of lymphocyte mediated immunity
## 201                                                                           regulation of intracellular signal transduction
## 202                                                                                              leukocyte cell-cell adhesion
## 203                                                                                                      response to cytokine
## 204                                                                                                  cellular ion homeostasis
## 205                                                                                                     metal ion homeostasis
## 206                                                                                                              MAPK cascade
## 207                                                                              regulation of mononuclear cell proliferation
## 208                                                                                                      response to wounding
## 209                                                                        regulation of multicellular organismal development
## 210                                                                                     positive regulation of cell migration
## 211                                                                                                     programmed cell death
## 212                                                                                                calcium-mediated signaling
## 213                                                          positive regulation of natural killer cell mediated cytotoxicity
## 214                                                                         regulation of myeloid leukocyte mediated immunity
## 215                                                                                                         T cell activation
## 216                                                                     regulation of inositol phosphate biosynthetic process
## 217                                                                                    cellular response to organic substance
## 218                                                                                 positive regulation of molecular function
## 219                                                                positive regulation of cytosolic calcium ion concentration
## 220                                                                                            circulatory system development
## 221                                                                                               cellular cation homeostasis
## 222                                                                                  positive regulation of apoptotic process
## 223                                                                             positive regulation of innate immune response
## 224                                                                                      positive regulation of cell motility
## 225                                                                                         myeloid leukocyte differentiation
## 226                                                                                                regulation of MAPK cascade
## 227                                                                                      regulation of innate immune response
## 228                                                                            positive regulation of vasculature development
## 229                                                                                       positive regulation of angiogenesis
## 230                                                                                 positive regulation of cell-cell adhesion
## 231                                                                                                                 secretion
## 232                                                                                            cellular metal ion homeostasis
## 233                                                                                          regulation of cell-cell adhesion
## 234                                                                                                     neutrophil activation
## 235                                                                               regulation of cell population proliferation
## 236                                                                                                          tube development
## 237                                                                                       second-messenger-mediated signaling
## 238                                                            positive regulation of inositol phosphate biosynthetic process
## 239                                                                              negative regulation of immune system process
## 240                                                                                           regulation of apoptotic process
## 241                                                                                       regulation of inflammatory response
## 242                                                                                         positive regulation of locomotion
## 243                                                                    positive regulation of leukocyte mediated cytotoxicity
## 244                                                                              positive regulation of inflammatory response
## 245                                                                                          regulation of response to stress
## 246                                                                                                      B cell proliferation
## 247                                                                                       positive regulation of MAPK cascade
## 248                                                                        positive regulation of phosphate metabolic process
## 249                                                                       positive regulation of phosphorus metabolic process
## 250                                                                               positive regulation of cell differentiation
## 251                                                                                          regulation of molecular function
## 252                                                                                                          cell development
## 253                                                                  anatomical structure formation involved in morphogenesis
## 254                                                                                                         response to lipid
## 255                                                                   negative regulation of multicellular organismal process
## 256                                                                                            homeostasis of number of cells
## 257                                                                                      activation of innate immune response
## 258                                                                                                         apoptotic process
## 259                                                                                        regulation of cell differentiation
## 260                                                                                                    platelet degranulation
## 261                                                                            positive regulation of leukocyte degranulation
## 262                                                                                           regulation of T cell activation
## 263                                                                                                       monocyte chemotaxis
## 264                                                                      positive regulation of cell population proliferation
## 265                                                                       positive regulation of lymphocyte mediated immunity
## 266                                                                                              homotypic cell-cell adhesion
## 267                                                                                     divalent inorganic cation homeostasis
## 268                                                                                      multicellular organismal homeostasis
## 269                                                                                                      chemical homeostasis
## 270                                                                            cellular divalent inorganic cation homeostasis
## 271                                                                                 positive regulation of catalytic activity
## 272                                                   antigen processing and presentation of peptide antigen via MHC class II
## 273                                                                                 negative regulation of biological process
## 274                                                                            positive regulation of leukocyte proliferation
## 275                                                                                    cellular response to cytokine stimulus
## 276                                 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
## 277                                                                                    response to oxygen-containing compound
## 278                                                                    antigen processing and presentation of peptide antigen
## 279                                                                                                   regulation of secretion
## 280                                         antigen processing and presentation of exogenous peptide antigen via MHC class II
## 281                                                                         neutrophil activation involved in immune response
## 282                                                                                             cellular chemical homeostasis
## 283                                                                                regulation of leukocyte cell-cell adhesion
## 284                                                                                 modulation of process of another organism
## 285                                                                                                lymphocyte differentiation
## 286                                                                            cell morphogenesis involved in differentiation
## 287                                                                                    positive regulation of gene expression
## 288                                                                                                       extracellular space
## 289                                                                                                      extracellular region
## 290                                                                                          external side of plasma membrane
## 291                                                                                                           plasma membrane
## 292                                                                                                          side of membrane
## 293                                                                                                            cell periphery
## 294                                                                                                              cell surface
## 295                                                                                                    immunoglobulin complex
## 296                                                                                       immunoglobulin complex, circulating
## 297                                                                                                                  membrane
## 298                                                                                                cellular anatomical entity
## 299                                                                                                        cellular_component
## 300                                                                                    intrinsic component of plasma membrane
## 301                                                                                     integral component of plasma membrane
## 302                                                                                                          receptor complex
## 303                                                                                           intrinsic component of membrane
## 304                                                                                            integral component of membrane
## 305                                                                                                    plasma membrane region
## 306                                                                                              MHC class II protein complex
## 307                                                                                                                  lysosome
## 308                                                                                                             lytic vacuole
## 309                                                                                                             membrane raft
## 310                                                                                                      membrane microdomain
## 311                                                                                           immunoglobulin receptor binding
## 312                                                                                                           antigen binding
## 313                                                                                                signaling receptor binding
## 314                                                                                                           protein binding
## 315                                                                                             molecular transducer activity
## 316                                                                                               signaling receptor activity
## 317                                                                                 transmembrane signaling receptor activity
## 318                                                                                               MHC protein complex binding
## 319                                                                                                                   binding
## 320                                                                                                  immune receptor activity
## 321                                                                                                        molecular_function
## 322                                                                                            MHC class Ib receptor activity
## 323                                                                                       MHC class I protein complex binding
## 324                                                                                      MHC class II protein complex binding
## 325                                                                                           CCR1 chemokine receptor binding
## 326                                                                                                                Meningitis
## 327                                                                                                     Unusual CNS infection
## 328                                                                                      Unusual infection by anatomical site
## 329                                                                                                                Vasculitis
## 330                                                                                                                     Fever
## 331                                                                                                    Constitutional symptom
## 332                                                                                     Abnormality of temperature regulation
## 333                                                                                                                 Skin rash
## 334                                                                                                              Splenomegaly
## 335                                                                                                                   Fatigue
## 336                                                                                                             Spherocytosis
## 337                                                                                                 Abnormality of the spleen
## 338                                                                                            Abnormal circulating IgA level
## 339                                                                                                                   Red eye
## 340                                                                                            Abnormality of the lymph nodes
## 341                                                                                                                      Pain
## 342                                                                                                              Autoimmunity
## 343                                                                                                Abnormal spleen morphology
## 344                                                                                           Abnormality of fluid regulation
## 345                                                                                                            Abdominal pain
## 346                                                                                                                Cellulitis
## 347                                                                                           Decreased circulating IgA level
## 348                                                                                            Abnormal circulating IgM level
## 349                                                                                           Decreased circulating total IgM
## 350                                                                                                                 Arthritis
## 351                                                                                                            Conjunctivitis
## 352                                                                                            Autosomal dominant inheritance
## 353                                                                                       Abnormality of the lymphatic system
## 354                                                                                                                  Headache
## 355                                                                                                  Abnormal lung morphology
## 356                                                                                                            Bronchiectasis
## 357                                                                            Abnormality of blood and blood-forming tissues
## 358                                                                                                        Agammaglobulinemia
## 359                                                                                                           Lymphadenopathy
## 360                                                                                            Abnormality of skin physiology
## 361                                                                                       Inflammatory abnormality of the eye
## 362                                                                              Anemia due to reduced life span of red cells
## 363                                                                                                          Hemolytic anemia
## 364                                                                                                Hematopoietic cell lineage
## 365                                                                                                 Graft-versus-host disease
## 366                                                                                                       Allograft rejection
## 367                                                                                                  Type I diabetes mellitus
## 368                                                                                                Autoimmune thyroid disease
## 369                                                                                                                    Asthma
## 370                                                                                                            KEGG root term
## 371                                                                                               Chemokine signaling pathway
## 372                                                                                       Antigen processing and presentation
## 373                                                                              Intestinal immune network for IgA production
## 374                                                                                                             Leishmaniasis
## 375                                                                                                                 Phagosome
## 376                                                                                    Cytokine-cytokine receptor interaction
## 377                                                                                 Natural killer cell mediated cytotoxicity
## 378                                                                                                              Tuberculosis
## 379                                                                                         B cell receptor signaling pathway
## 380                                                             Viral protein interaction with cytokine and cytokine receptor
## 381                                                                                           Staphylococcus aureus infection
## 382                                                                                                         Viral myocarditis
## 383                                                                                                   Cell adhesion molecules
## 384                                                                                                                   Malaria
## 385                                                                                   Transcriptional misregulation in cancer
## 386                                                                                                             Toxoplasmosis
## 387                                                                                                  Primary immunodeficiency
## 388                                                                                              Epstein-Barr virus infection
## 389                                                                                                      Rheumatoid arthritis
## 390                                                                                  C-type lectin receptor signaling pathway
## 391                                                                                                   African trypanosomiasis
## 392                                                                                                Osteoclast differentiation
## 393                                                                                                Inflammatory bowel disease
## 394                                                                                          Th1 and Th2 cell differentiation
## 395                                                                                                     Ras signaling pathway
## 396                                                                                                            mmu-miR-27b-3p
## 397                                        Antigen activates B Cell Receptor (BCR) leading to generation of second messengers
## 398                                                                                                           FCGR activation
## 399                                                                                            Scavenging of heme from plasma
## 400                                                  Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
## 401                                                                                              CD22 mediated BCR regulation
## 402                                                                      Binding and Uptake of Ligands by Scavenger Receptors
## 403                                                                             Role of LAT2/NTAL/LAB on calcium mobilization
## 404                                                                                     Role of phospholipids in phagocytosis
## 405                                                                         Classical antibody-mediated complement activation
## 406                                                                            Cell surface interactions at the vascular wall
## 407                                                                                          Creation of C4 and C2 activators
## 408                                                                                          FCERI mediated Ca+2 mobilization
## 409                                                                                          Initial triggering of complement
## 410                                                                                            FCERI mediated MAPK activation
## 411                                                                                          Regulation of Complement cascade
## 412                                                                                                        Complement cascade
## 413                                                                            Fcgamma receptor (FCGR) dependent phagocytosis
## 414                                                                                                      Innate Immune System
## 415                                                                 Regulation of actin dynamics for phagocytic cup formation
## 416                                                                                    Signaling by the B Cell Receptor (BCR)
## 417                                                                                                             Immune System
## 418                                                                                                                Hemostasis
## 419                                                                                           FCERI mediated NF-kB activation
## 420                                                                                     Fc epsilon receptor (FCERI) signaling
## 421                                                                                                    Adaptive Immune System
## 422                                                                                                Vesicle-mediated transport
## 423                                                                                                        REACTOME root term
## 424                                                                                                  Neutrophil degranulation
## 425                                                                    Erythrocytes take up oxygen and release carbon dioxide
## 426                                                                                      Class A/1 (Rhodopsin-like receptors)
## 427                                                                    Erythrocytes take up carbon dioxide and release oxygen
## 428                                                                                           O2/CO2 exchange in erythrocytes
## 429                                                                                                         Signaling by GPCR
## 430                                                                                                       GPCR ligand binding
## 431                                                                                                        DAP12 interactions
## 432                                                                                                       Signal Transduction
## 433                                                                                       Chemokine receptors bind chemokines
## 434                                                                                                GPCR downstream signalling
## 435                                                                             Metal sequestration by antimicrobial proteins
## 436                                                                                                           DAP12 signaling
## 437                                                                                          Peptide ligand-binding receptors
## 438                                                                                                    Response to metal ions
## 439                                                                                              Metallothioneins bind metals
## 440                                                                                                    Antimicrobial peptides
## 441                                                                                                         RHOA GTPase cycle
## 442                                                                                                          RHO GTPase cycle
## 443                                                                                  Factor: PU.1; motif: NNNNYYYACTTCCTCTTTY
## 444                                                                                            Factor: LF-A1; motif: GGGSTCWR
## 445                                                                                           Factor: SREBP-1; motif: CACSCCA
## 446                                                                               Factor: NMYC; motif: CAYCTG; match class: 1
## 447                                                                                  Factor: IRF-4; motif: NAAARRGGAASTGARANN
## 448                                                                                               Factor: NMYC; motif: CAYCTG
## 449                                                                                               Factor: PU.1; motif: AGGAAG
## 450                                                                                              Factor: Elf-1; motif: AGGAAG
## 451                                                                                              Factor: Spi-B; motif: TTCYBC
## 452                                                                              Factor: Spi-B; motif: TTCYBC; match class: 1
## 453                                                                                                                  Transfac
## 454                                                                                             Factor: PU.1; motif: WGAGGAAG
## 455                                                                                         Factor: Pax-4; motif: DTTTTCCACCN
## 456                                                                                            Factor: Sox-18; motif: CAAWGBB
## 457                                                                   Factor: LXR-alpha:RXR-alpha; motif: TGACCTNNAGTRACCYNNN
## 458                                                                                                Factor: Kid3; motif: CCACN
## 459                                                   Factor: LXR-alpha:RXR-alpha; motif: TGACCTNNAGTRACCYNNN; match class: 1
## 460                                                                                             Factor: Sox-17; motif: TTGTYY
## 461                                                                                              Factor: C-Jun; motif: TGACTC
## 462                                                                                Factor: Kid3; motif: CCACN; match class: 1
## 463                                                                                              Factor: TEF-1; motif: GRRATG
## 464                                                                               Factor: PU.1; motif: AGGAAG; match class: 1
## 465                                                                              Factor: Elf-1; motif: AGGAAG; match class: 1
## 466                                                                                         Factor: TFII-I; motif: NAGGAAGTGN
## 467                                                                                               Factor: PARP; motif: TTTCYN
## 468                                                                                       Factor: SREBP-1; motif: KATCACCCCAC
## 469                                                                                             Factor: MZF-1; motif: TGGGGAR
## 470                                                                                               Factor: MEL1; motif: GATGAG
## 471                                                                              Factor: GKLF; motif: CCTCCYN; match class: 1
## 472                                                                                      Factor: Lyl-1; motif: NCAKCTGYTNYCNN
## 473                                                                            Factor: Sox-18; motif: CAAWGBB; match class: 1
## 474                                                                                    Factor: elf5; motif: RGAAGRAGGAAGNRRNN
## 475                                                                                     Factor: PU.1; motif: ARAAAGRGGAAGTGNN
## 476                                                                                      Factor: ZIC3; motif: NNNCACAGCAKGNNN
## 477                                                                                              Factor: PEA3; motif: ACWTCCK
## 478                                                                                              Factor: GKLF; motif: CCTCCYN
## 479                                                                                              Factor: CPBP; motif: SNCCCNN
## 480                                                                                Factor: RXR-ALPHA; motif: KCNCRWAGKTYRNNNN
## 481                                                                                      Factor: LEF-1; motif: NCCTTTSWNNTNYN
## 482                                                                            Factor: LF-A1; motif: GGGSTCWR; match class: 1
## 483                                                                           Factor: myogenin; motif: CAGCTG; match class: 1
## 484                                                                                           Factor: myogenin; motif: CAGCTG
## 485                                                                                        Factor: Smad4; motif: NTGTCTGNCACN
## 486                                                                      Factor: ZIC3; motif: NNNCACAGCAKGNNN; match class: 1
## 487                                                                      Factor: Lyl-1; motif: NCAKCTGYTNYCNN; match class: 1
## 488                                                                                           Factor: Tbx5; motif: TNAGGTGTKV
## 489                                                                                             Factor: Tal-1; motif: CAGATGG
## 490                                                                                          Factor: Pax-5; motif: RRNGRNGCAN
## 491                                                                               Factor: AML1; motif: TGTGGT; match class: 1
## 492                                                                              Factor: AML1a; motif: TGTGGT; match class: 1
## 493                                                                               Factor: AML1; motif: TGTGGT; match class: 1
## 494                                                                                         Factor: TEF-1; motif: RCATTCCWGSN
## 495                                                                             Factor: MZF-1; motif: TGGGGAR; match class: 1
## 496                                                                                             Factor: GATA-5; motif: TATCTN
## 497                                                                                             Factor: SMAD3; motif: CAGACAS
## 498                                                                                   Factor: c-Ets-1; motif: RCAGGAAGTGNNTNS
## 499                                                                                      Factor: Spi1; motif: NRAAAGAGGAAGTGN
## 500                                                                                              Factor: Elk-1; motif: GGAAGN
## 501                                                                    Factor: GR; motif: NNNNNNCNNTNTGTNCTNN; match class: 1
## 502                                                                                        Factor: Pax-4; motif: NNNNNYCACCCB
## 503                                                                                            Factor: JunB; motif: NTGAGTCAY
## 504                                                                                             Factor: NFATc2; motif: GGAAAA
## 505                                                                                             Factor: NFATc3; motif: GGAAAA
## 506                                                                                             Factor: NFATc2; motif: GGAAAA
## 507                                                                              Factor: KLF; motif: GGGNGGGG; match class: 1
## 508                                                                                         Factor: PEBP2beta; motif: TGTGGTY
## 509                                                                                           Factor: CP2; motif: GCHCDAMCCAG
## 510                                                                        Factor: Pax-4; motif: NNNNNYCACCCB; match class: 1
## 511                                                                                               Factor: AML1; motif: TGTGGT
## 512                                                                                              Factor: AML1a; motif: TGTGGT
## 513                                                                                               Factor: AML1; motif: TGTGGT
## 514                                                                              Factor: RAR-gamma; motif: RGGTCANNNTGNCCNNNN
## 515                                                                                           Factor: c-Ets-2; motif: CTTCCTG
## 516                                                                                             Factor: Elk-1; motif: CTTCCKG
## 517                                                                                           Factor: SMAD3; motif: TGTCTGTCT
## 518                                                                           Factor: SMAD3; motif: TGTCTGTCT; match class: 1
## 519                                                                                            Factor: Sox-10; motif: NACAAWG
## 520                                                                                       Factor: MZF-1; motif: KNGNKAGGGGNAA
## 521                                                                                    Factor: GR; motif: NNNNNNCNNTNTGTNCTNN
## 522                                                                              Factor: Smad2; motif: AGACAN; match class: 1
## 523                                                                                              Factor: MAFB; motif: NTCAGCN
## 524                                                                                     Factor: SMAD4; motif: GKSRKKCAGMCANCY
## 525                                                                                              Factor: Ets; motif: ACTTCCTS
## 526                                                                              Factor: CPBP; motif: SNCCCNN; match class: 1
## 527                                                                              Factor: MAFB; motif: NTCAGCN; match class: 1
## 528                                                                                   Factor: ESRRA; motif: NKNNAGGGGTCANNNNN
## 529                                                                                       Factor: p300; motif: NNNGGGAGTNNNNS
## 530                                                                                                              WIKIPATHWAYS
## 531                                                                                                       GPCRs, non-odorant 
## 532                                                                                             GPCRs, class A rhodopsin-like
## 533                                                                                   Microglia pathogen phagocytosis pathway
## 534                                                                                               Chemokine signaling pathway
## 535                                                                                                             Lung fibrosis
## 536                                                                                        Tyrobp causal network in microglia
## 537                                                                                                            Focal adhesion
## 538                                                                                                        Macrophage markers
## 539                                                                                                    IL-3 signaling pathway
##     effective_domain_size source_order
## 1                   21514          291
## 2                   21514          271
## 3                   21514          286
## 4                   21514         2884
## 5                   21514         1027
## 6                   21514        15390
## 7                   21514        15352
## 8                   21514         1087
## 9                   21514         2881
## 10                  21514        13097
## 11                  21514         1073
## 12                  21514         1401
## 13                  21514         1390
## 14                  21514        21964
## 15                  21514         1397
## 16                  21514        13197
## 17                  21514        16036
## 18                  21514        12178
## 19                  21514          905
## 20                  21514          550
## 21                  21514         3975
## 22                  21514        12763
## 23                  21514         3973
## 24                  21514          906
## 25                  21514         1323
## 26                  21514         1093
## 27                  21514        15295
## 28                  21514        15293
## 29                  21514        15350
## 30                  21514        14876
## 31                  21514        14245
## 32                  21514         2847
## 33                  21514         1321
## 34                  21514        22200
## 35                  21514         2846
## 36                  21514         2887
## 37                  21514        11902
## 38                  21514         1333
## 39                  21514         3061
## 40                  21514         4537
## 41                  21514         3984
## 42                  21514        15364
## 43                  21514         1099
## 44                  21514        11523
## 45                  21514        15363
## 46                  21514          903
## 47                  21514         2885
## 48                  21514         7643
## 49                  21514        15684
## 50                  21514         2845
## 51                  21514         3050
## 52                  21514         3062
## 53                  21514         1335
## 54                  21514        15366
## 55                  21514        14875
## 56                  21514         1104
## 57                  21514         6929
## 58                  21514        15370
## 59                  21514         5660
## 60                  21514        15686
## 61                  21514         2888
## 62                  21514         3499
## 63                  21514        14820
## 64                  21514        16044
## 65                  21514         2880
## 66                  21514         2836
## 67                  21514        14824
## 68                  21514        18589
## 69                  21514        15301
## 70                  21514         3526
## 71                  21514        15305
## 72                  21514         5738
## 73                  21514         5812
## 74                  21514        17746
## 75                  21514        15139
## 76                  21514        15011
## 77                  21514         8532
## 78                  21514        15677
## 79                  21514         7590
## 80                  21514         2883
## 81                  21514         1342
## 82                  21514         8794
## 83                  21514         8534
## 84                  21514        11442
## 85                  21514        15678
## 86                  21514         3051
## 87                  21514        15138
## 88                  21514         1336
## 89                  21514         2762
## 90                  21514         7711
## 91                  21514        15672
## 92                  21514         8274
## 93                  21514        14834
## 94                  21514         4269
## 95                  21514        15393
## 96                  21514         1338
## 97                  21514        14815
## 98                  21514         7695
## 99                  21514        15126
## 100                 21514        15304
## 101                 21514          638
## 102                 21514         1163
## 103                 21514          927
## 104                 21514         7913
## 105                 21514         8272
## 106                 21514         4017
## 107                 21514         3162
## 108                 21514        11605
## 109                 21514         4263
## 110                 21514        17080
## 111                 21514        21844
## 112                 21514         4788
## 113                 21514         2869
## 114                 21514        11655
## 115                 21514         1164
## 116                 21514         7647
## 117                 21514        10450
## 118                 21514         4262
## 119                 21514          583
## 120                 21514         4303
## 121                 21514          875
## 122                 21514         5641
## 123                 21514          878
## 124                 21514        29141
## 125                 21514        29131
## 126                 21514         8795
## 127                 21514        12211
## 128                 21514         8266
## 129                 21514          640
## 130                 21514         1391
## 131                 21514        13471
## 132                 21514          584
## 133                 21514        24635
## 134                 21514        15628
## 135                 21514         5059
## 136                 21514        19091
## 137                 21514          435
## 138                 21514        12212
## 139                 21514         7642
## 140                 21514         1019
## 141                 21514        21975
## 142                 21514         7712
## 143                 21514         4787
## 144                 21514        14816
## 145                 21514          916
## 146                 21514        19732
## 147                 21514         1354
## 148                 21514        11816
## 149                 21514         7808
## 150                 21514          641
## 151                 21514         1088
## 152                 21514        11443
## 153                 21514        11626
## 154                 21514         9844
## 155                 21514        18970
## 156                 21514        21845
## 157                 21514          462
## 158                 21514        29352
## 159                 21514         8268
## 160                 21514        18972
## 161                 21514        13491
## 162                 21514         3563
## 163                 21514          882
## 164                 21514        18590
## 165                 21514         1344
## 166                 21514        15765
## 167                 21514          669
## 168                 21514         3080
## 169                 21514        19633
## 170                 21514        12108
## 171                 21514         5058
## 172                 21514          586
## 173                 21514        26223
## 174                 21514        14246
## 175                 21514          307
## 176                 21514        11624
## 177                 21514        25700
## 178                 21514        10240
## 179                 21514         1465
## 180                 21514          928
## 181                 21514         9125
## 182                 21514         1356
## 183                 21514        15756
## 184                 21514         7912
## 185                 21514         7697
## 186                 21514        22062
## 187                 21514        28899
## 188                 21514         3556
## 189                 21514         1463
## 190                 21514        12107
## 191                 21514        16763
## 192                 21514        19587
## 193                 21514         8790
## 194                 21514        15310
## 195                 21514        10933
## 196                 21514        15236
## 197                 21514          891
## 198                 21514        15551
## 199                 21514        11495
## 200                 21514         1345
## 201                 21514        25698
## 202                 21514         3055
## 203                 21514         9659
## 204                 21514         2812
## 205                 21514        16749
## 206                 21514           72
## 207                 21514         9126
## 208                 21514         3979
## 209                 21514        29234
## 210                 21514         7809
## 211                 21514         5112
## 212                 21514         6928
## 213                 21514        13640
## 214                 21514         1518
## 215                 21514        11522
## 216                 21514         5036
## 217                 21514        19316
## 218                 21514        12616
## 219                 21514         3098
## 220                 21514        20190
## 221                 21514         7662
## 222                 21514        12105
## 223                 21514        13099
## 224                 21514        29354
## 225                 21514         1215
## 226                 21514        12281
## 227                 21514        13098
## 228                 21514        27000
## 229                 21514        13472
## 230                 21514         7579
## 231                 21514        14421
## 232                 21514         2814
## 233                 21514         7577
## 234                 21514        11527
## 235                 21514        11533
## 236                 21514        10274
## 237                 21514         7012
## 238                 21514        17466
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##                                                                    parents
## 1                                                            CORUM:0000000
## 2                                                            CORUM:0000000
## 3                                                            CORUM:0000000
## 4                                                   GO:0002376, GO:0050896
## 5                                                               GO:0008150
## 6                                                               GO:0008150
## 7                                                               GO:0050851
## 8                                                               GO:0002252
## 9                                                               GO:0006950
## 10                                                  GO:0006955, GO:0098542
## 11                                                  GO:0002757, GO:0002768
## 12                                                  GO:0002764, GO:0007166
## 13                                                  GO:0002253, GO:0002764
## 14                                                  GO:0006952, GO:0051707
## 15                                                  GO:0007165, GO:0050776
## 16                                                  GO:0001775, GO:0002376
## 17                                                  GO:0043207, GO:0044419
## 18                                                  GO:0009605, GO:0009607
## 19                                                              GO:0002376
## 20                                                              GO:0009987
## 21                                                              GO:0050896
## 22                                                              GO:0008150
## 23                                                              GO:0050896
## 24                                                  GO:0002376, GO:0050778
## 25                                      GO:0002376, GO:0002682, GO:0048518
## 26                                                              GO:0002443
## 27                          GO:0002684, GO:0006955, GO:0048584, GO:0050776
## 28                                      GO:0002682, GO:0006955, GO:0048583
## 29                                                              GO:0002429
## 30                                      GO:0048518, GO:0048583, GO:0050896
## 31                                                              GO:0045321
## 32                                      GO:0006897, GO:0006909, GO:0099024
## 33                                                  GO:0002376, GO:0050789
## 34                                                              GO:0010324
## 35                                      GO:0006897, GO:0006909, GO:0008037
## 36                                                  GO:0002455, GO:0006956
## 37                                                  GO:0009617, GO:0098542
## 38                                      GO:0002682, GO:0045321, GO:0050865
## 39              GO:0007154, GO:0009987, GO:0023052, GO:0050794, GO:0051716
## 40                                                              GO:0061024
## 41                                                              GO:0051707
## 42                                                  GO:0001775, GO:0050794
## 43                                                  GO:0006959, GO:0016064
## 44                                                              GO:0046649
## 45                                                  GO:0042113, GO:0051249
## 46                                                              GO:0006955
## 47                                      GO:0002252, GO:0002253, GO:0006959
## 48                                                              GO:0008150
## 49                                                  GO:0002694, GO:0046649
## 50                                                              GO:0016192
## 51                                                              GO:0009987
## 52                                                              GO:0007165
## 53                          GO:0002684, GO:0002694, GO:0045321, GO:0050867
## 54                                      GO:0001775, GO:0048522, GO:0050865
## 55                                                  GO:0050789, GO:0050896
## 56                                                              GO:0002250
## 57                                                  GO:0002449, GO:0002460
## 58                                      GO:0042113, GO:0050864, GO:0051251
## 59                                                              GO:0019724
## 60                                      GO:0002696, GO:0046649, GO:0051249
## 61                                                              GO:0006955
## 62                                                              GO:0009987
## 63                                                  GO:0008150, GO:0050789
## 64                                                  GO:0009987, GO:0050896
## 65                                                              GO:0050896
## 66                                                              GO:0016192
## 67                                      GO:0009987, GO:0048518, GO:0050794
## 68                                                              GO:0008150
## 69                                                  GO:0008150, GO:0065007
## 70                                                                        
## 71                                                  GO:0009987, GO:0050789
## 72                                                              GO:0006810
## 73                                                              GO:0048870
## 74                                                              GO:0016043
## 75                                                              GO:0009987
## 76                                                  GO:0007275, GO:0048856
## 77                                                  GO:0009605, GO:0048583
## 78                                                  GO:0032501, GO:0050789
## 79                                                  GO:0009653, GO:0050793
## 80                                                              GO:0006952
## 81                                                  GO:0002443, GO:0002697
## 82                                                              GO:0008150
## 83                                      GO:0009605, GO:0032101, GO:0048584
## 84                                                              GO:0008150
## 85                                      GO:0032501, GO:0048518, GO:0051239
## 86                                                              GO:0009987
## 87                                                  GO:0009987, GO:0032502
## 88                                                  GO:0002252, GO:0002682
## 89                                                              GO:0051234
## 90                                                              GO:0048869
## 91                                                              GO:0051179
## 92                                      GO:0006952, GO:0031347, GO:0048584
## 93                                                  GO:0002520, GO:0048513
## 94                                                              GO:0008150
## 95                                                  GO:0002376, GO:0016477
## 96                                      GO:0002252, GO:0002684, GO:0002697
## 97                                                              GO:0048856
## 98                                                              GO:0048534
## 99                                                              GO:0032502
## 100                                                 GO:0032502, GO:0050789
## 101                                                             GO:0009987
## 102                                                 GO:0002376, GO:0048731
## 103                                                             GO:0045321
## 104                                                 GO:0050900, GO:0060326
## 105                                                 GO:0006952, GO:0080134
## 106                                                 GO:0032502, GO:0048856
## 107                                                 GO:0032501, GO:0048856
## 108                                                             GO:0050896
## 109             GO:0007165, GO:0009966, GO:0010647, GO:0023056, GO:0048584
## 110                                     GO:0006935, GO:0016477, GO:0070887
## 111                                                             GO:0050900
## 112                                     GO:0007154, GO:0010646, GO:0048522
## 113                                                 GO:0042221, GO:0042330
## 114                                                 GO:0009605, GO:0040011
## 115                                                 GO:0030097, GO:0030154
## 116                                     GO:0023051, GO:0023052, GO:0048518
## 117                                                             GO:0007165
## 118                         GO:0007165, GO:0010646, GO:0023051, GO:0048583
## 119                                                 GO:0010467, GO:0032501
## 120                                                             GO:0042221
## 121                                                 GO:0002429, GO:0002758
## 122                                                             GO:0071840
## 123                                                 GO:0002220, GO:1990858
## 124                                                             GO:1990840
## 125                                                             GO:0009607
## 126                                                             GO:0008150
## 127                                     GO:0002252, GO:0045055, GO:0051649
## 128                                                 GO:0001906, GO:0050794
## 129                                                 GO:0001906, GO:0002443
## 130                                                 GO:0002218, GO:0002757
## 131                                     GO:0001525, GO:0022603, GO:1901342
## 132                                     GO:0001816, GO:0010468, GO:0051239
## 133                                                 GO:0001944, GO:2000026
## 134                                                             GO:0008150
## 135                                     GO:0008219, GO:0010941, GO:0048522
## 136                                                 GO:0042221, GO:0051716
## 137                                                 GO:0048514, GO:0048646
## 138                                     GO:0002697, GO:0043299, GO:1903305
## 139                                                 GO:0023052, GO:0050789
## 140                                                 GO:0002263, GO:0045321
## 141                                                             GO:0007155
## 142                                                 GO:0007155, GO:0050794
## 143                                                 GO:0007154, GO:0050794
## 144                                                 GO:0001568, GO:0035239
## 145                                     GO:0001775, GO:0002252, GO:0006955
## 146                                                             GO:0009987
## 147                                     GO:0002228, GO:0002706, GO:0045088
## 148                                                             GO:0065008
## 149                                                 GO:0016477, GO:2000145
## 150                                     GO:0001909, GO:0002703, GO:0031341
## 151                                                             GO:0002443
## 152                                                 GO:0040011, GO:0050789
## 153                                     GO:0001910, GO:0002715, GO:0042267
## 154                                                 GO:0034097, GO:0045087
## 155                                                             GO:0008283
## 156                                                             GO:0097529
## 157                                                 GO:0001944, GO:0048856
## 158                                     GO:0040012, GO:0048870, GO:0050794
## 159                                     GO:0001906, GO:0031341, GO:0048522
## 160                                                 GO:0042127, GO:0070661
## 161                                     GO:0007155, GO:0030155, GO:0048522
## 162                                                             GO:0009987
## 163                                                 GO:0002449, GO:0045087
## 164                                                             GO:0065007
## 165                                     GO:0002443, GO:0002699, GO:0002703
## 166                                                 GO:0043085, GO:0051336
## 167                                                 GO:0048731, GO:0072359
## 168                                                             GO:0007165
## 169                                                             GO:0050900
## 170                                     GO:0010942, GO:0012501, GO:0043067
## 171                                                 GO:0008219, GO:0050794
## 172                         GO:0001816, GO:0001817, GO:0010628, GO:0051240
## 173                                                             GO:0002521
## 174                                                 GO:0032943, GO:0046649
## 175                                                             GO:0009653
## 176                                                 GO:0001909, GO:0002228
## 177                                     GO:0009967, GO:0035556, GO:1902531
## 178                                                 GO:0009653, GO:0035295
## 179                                     GO:0002831, GO:0009607, GO:0048584
## 180                                                 GO:0002274, GO:0002366
## 181                                                             GO:0070661
## 182                         GO:0002228, GO:0002708, GO:0002715, GO:0045089
## 183                                                             GO:0050790
## 184                                                 GO:0071621, GO:1990266
## 185                                                 GO:0030097, GO:0030154
## 186                                                             GO:0050801
## 187                                                             GO:0097530
## 188                                                             GO:0009987
## 189                                                 GO:0009607, GO:0048583
## 190                                                 GO:0010941, GO:0012501
## 191                                                             GO:0050801
## 192                                                 GO:0030595, GO:0097530
## 193                                     GO:0002237, GO:0033993, GO:1901700
## 194                                                             GO:0048878
## 195                                                             GO:0002274
## 196                                     GO:0032944, GO:0046651, GO:0051249
## 197                                     GO:0009617, GO:0010033, GO:0043207
## 198                                     GO:0032502, GO:0048518, GO:0050793
## 199                                                             GO:0009611
## 200                                                 GO:0002449, GO:0002703
## 201                                                 GO:0009966, GO:0035556
## 202                                                             GO:0098609
## 203                                                             GO:0010033
## 204                                                 GO:0050801, GO:0055082
## 205                                                 GO:0055080, GO:0098771
## 206                                                             GO:0035556
## 207                                                 GO:0032943, GO:0070663
## 208                                                             GO:0006950
## 209                                     GO:0007275, GO:0050793, GO:0051239
## 210                                     GO:0016477, GO:0030334, GO:2000147
## 211                                                             GO:0008219
## 212                                                             GO:0019932
## 213                         GO:0001912, GO:0002717, GO:0042267, GO:0042269
## 214                                                 GO:0002444, GO:0002703
## 215                                                             GO:0046649
## 216 GO:0010675, GO:0019220, GO:0031326, GO:0032958, GO:0043255, GO:1902930
## 217                                                 GO:0010033, GO:0070887
## 218                                                             GO:0065009
## 219                                                             GO:0065008
## 220                                                             GO:0048731
## 221                                                 GO:0006873, GO:0055080
## 222                                     GO:0006915, GO:0042981, GO:0043068
## 223 GO:0002833, GO:0031349, GO:0032103, GO:0045087, GO:0045088, GO:0050778
## 224                         GO:0040017, GO:0048522, GO:0048870, GO:2000145
## 225                                                 GO:0002521, GO:0030099
## 226                                                 GO:0000165, GO:1902531
## 227             GO:0002831, GO:0031347, GO:0032101, GO:0045087, GO:0050776
## 228                         GO:0001944, GO:0051094, GO:0051240, GO:1901342
## 229                                     GO:0001525, GO:0045765, GO:1904018
## 230                                     GO:0022407, GO:0045785, GO:0098609
## 231                                                             GO:0006810
## 232                                                 GO:0030003, GO:0055065
## 233                                                 GO:0030155, GO:0098609
## 234                                                             GO:0036230
## 235                                                 GO:0008283, GO:0050794
## 236                                                 GO:0007275, GO:0048856
## 237                                                             GO:0035556
## 238 GO:0010676, GO:0010919, GO:0031328, GO:0032958, GO:0045937, GO:1902932
## 239                                     GO:0002376, GO:0002682, GO:0048519
## 240                                                 GO:0006915, GO:0043067
## 241                                     GO:0006954, GO:0031347, GO:0032101
## 242                                     GO:0040011, GO:0040012, GO:0048518
## 243                         GO:0001909, GO:0001910, GO:0002705, GO:0031343
## 244                         GO:0006954, GO:0031349, GO:0032103, GO:0050727
## 245                                                 GO:0006950, GO:0048583
## 246                                                 GO:0042113, GO:0046651
## 247                                     GO:0000165, GO:0043408, GO:1902533
## 248                                     GO:0006796, GO:0010562, GO:0019220
## 249                                     GO:0006793, GO:0031325, GO:0051174
## 250                         GO:0030154, GO:0045595, GO:0048522, GO:0051094
## 251                                                             GO:0065007
## 252                                     GO:0030154, GO:0048856, GO:0048869
## 253                                                 GO:0009653, GO:0032502
## 254                                                             GO:0010033
## 255                                     GO:0032501, GO:0048519, GO:0051239
## 256                                                             GO:0042592
## 257                                                 GO:0002253, GO:0045089
## 258                                                             GO:0012501
## 259                                     GO:0030154, GO:0050793, GO:0050794
## 260                                                 GO:0045055, GO:0051649
## 261                         GO:0002699, GO:0043299, GO:0043300, GO:1903307
## 262                                                 GO:0042110, GO:0051249
## 263                                     GO:0030595, GO:0071674, GO:0097529
## 264                                     GO:0008283, GO:0042127, GO:0048522
## 265                                     GO:0002449, GO:0002705, GO:0002706
## 266                                                             GO:0098609
## 267                                                 GO:0055080, GO:0098771
## 268                                                 GO:0032501, GO:0042592
## 269                                                             GO:0042592
## 270                                                 GO:0030003, GO:0072507
## 271                                                 GO:0044093, GO:0050790
## 272                                                 GO:0002504, GO:0048002
## 273                                                 GO:0008150, GO:0050789
## 274                                     GO:0008284, GO:0070661, GO:0070663
## 275                                                 GO:0034097, GO:0071310
## 276                                                             GO:0019882
## 277                                                             GO:0042221
## 278                                                             GO:0019882
## 279                                                 GO:0046903, GO:0051049
## 280                                                 GO:0002478, GO:0002495
## 281                                                 GO:0002275, GO:0042119
## 282                                                 GO:0019725, GO:0048878
## 283                                                 GO:0007159, GO:0022407
## 284                                                             GO:0044419
## 285                                                 GO:0046649, GO:1903131
## 286                                                 GO:0000902, GO:0048468
## 287                                     GO:0010467, GO:0010468, GO:0010604
## 288                                                 GO:0005576, GO:0110165
## 289                                                             GO:0110165
## 290                                     GO:0005886, GO:0009986, GO:0098552
## 291                                                 GO:0016020, GO:0071944
## 292                                                 GO:0016020, GO:0110165
## 293                                                             GO:0110165
## 294                                                             GO:0110165
## 295                                                             GO:0032991
## 296                                                 GO:0005615, GO:0019814
## 297                                                             GO:0110165
## 298                                                             GO:0005575
## 299                                                                       
## 300                                                 GO:0005886, GO:0031224
## 301                                                 GO:0016021, GO:0031226
## 302                                                             GO:0032991
## 303                                                 GO:0016020, GO:0110165
## 304                                                             GO:0031224
## 305                                                 GO:0005886, GO:0016020
## 306                                                             GO:0042611
## 307                                                             GO:0000323
## 308                                                             GO:0005773
## 309                                                             GO:0098857
## 310                                                             GO:0016020
## 311                                                             GO:0005102
## 312                                                             GO:0005488
## 313                                                             GO:0005515
## 314                                                             GO:0005488
## 315                                                             GO:0003674
## 316                                                             GO:0060089
## 317                                                             GO:0038023
## 318                                                             GO:0044877
## 319                                                             GO:0003674
## 320                                                             GO:0038023
## 321                                                                       
## 322                                                 GO:0004888, GO:0140375
## 323                                                             GO:0023023
## 324                                                             GO:0023023
## 325                                                             GO:0048020
## 326                                                             HP:0011450
## 327                                                 HP:0002011, HP:0032158
## 328                                                             HP:0032101
## 329                                                             HP:0033353
## 330                                                             HP:0004370
## 331                                                             HP:0000118
## 332                                                             HP:0012337
## 333                                                             HP:0011123
## 334                                                 HP:0003271, HP:0025408
## 335                                                             HP:0025142
## 336                                                             HP:0004447
## 337                                                 HP:0002012, HP:0100763
## 338                                                             HP:0010701
## 339                                                             HP:0008047
## 340                                                             HP:0100763
## 341                                                             HP:0025142
## 342                                                             HP:0010978
## 343                                                             HP:0001743
## 344                                                             HP:0012337
## 345                                                 HP:0011458, HP:0012531
## 346                                                             HP:0003549
## 347                                                 HP:0004313, HP:0410240
## 348                                                             HP:0010701
## 349                                                 HP:0004313, HP:0410243
## 350                                                             HP:0001367
## 351                                     HP:0000502, HP:0025337, HP:0100533
## 352                                                             HP:0000005
## 353                                                 HP:0002597, HP:0002715
## 354                                                             HP:0012638
## 355                                                             HP:0012252
## 356                                                             HP:0025426
## 357                                                             HP:0000118
## 358                                                             HP:0004313
## 359                                                             HP:0002733
## 360                                                             HP:0000951
## 361                                                 HP:0012373, HP:0012649
## 362                                                             HP:0001903
## 363                                                             HP:0011895
## 364                                                             KEGG:00000
## 365                                                             KEGG:00000
## 366                                                             KEGG:00000
## 367                                                             KEGG:00000
## 368                                                             KEGG:00000
## 369                                                             KEGG:00000
## 370                                                                       
## 371                                                             KEGG:00000
## 372                                                             KEGG:00000
## 373                                                             KEGG:00000
## 374                                                             KEGG:00000
## 375                                                             KEGG:00000
## 376                                                             KEGG:00000
## 377                                                             KEGG:00000
## 378                                                             KEGG:00000
## 379                                                             KEGG:00000
## 380                                                             KEGG:00000
## 381                                                             KEGG:00000
## 382                                                             KEGG:00000
## 383                                                             KEGG:00000
## 384                                                             KEGG:00000
## 385                                                             KEGG:00000
## 386                                                             KEGG:00000
## 387                                                             KEGG:00000
## 388                                                             KEGG:00000
## 389                                                             KEGG:00000
## 390                                                             KEGG:00000
## 391                                                             KEGG:00000
## 392                                                             KEGG:00000
## 393                                                             KEGG:00000
## 394                                                             KEGG:00000
## 395                                                             KEGG:00000
## 396                                                           MIRNA:000000
## 397                                                      REAC:R-MMU-983705
## 398                                                     REAC:R-MMU-2029480
## 399                                                     REAC:R-MMU-2173782
## 400                                                     REAC:R-MMU-1280218
## 401                                                      REAC:R-MMU-983705
## 402                                                     REAC:R-MMU-5653656
## 403                                                     REAC:R-MMU-2454202
## 404                                                     REAC:R-MMU-2029480
## 405                                                      REAC:R-MMU-166786
## 406                                                      REAC:R-MMU-109582
## 407                                                      REAC:R-MMU-166663
## 408                                                     REAC:R-MMU-2454202
## 409                                                      REAC:R-MMU-166658
## 410                                                     REAC:R-MMU-2454202
## 411                                                      REAC:R-MMU-166658
## 412                                                      REAC:R-MMU-168249
## 413                                                      REAC:R-MMU-168249
## 414                                                      REAC:R-MMU-168256
## 415                                                     REAC:R-MMU-2029480
## 416                                                     REAC:R-MMU-1280218
## 417                                                           REAC:0000000
## 418                                                           REAC:0000000
## 419                                                     REAC:R-MMU-2454202
## 420                                                      REAC:R-MMU-168249
## 421                                                      REAC:R-MMU-168256
## 422                                                           REAC:0000000
## 423                                                                       
## 424                                                      REAC:R-MMU-168249
## 425                                                     REAC:R-MMU-1480926
## 426                                                      REAC:R-MMU-500792
## 427                                                     REAC:R-MMU-1480926
## 428                                                      REAC:R-MMU-382551
## 429                                                      REAC:R-MMU-162582
## 430                                                      REAC:R-MMU-372790
## 431                                                      REAC:R-MMU-168249
## 432                                                           REAC:0000000
## 433                                                      REAC:R-MMU-375276
## 434                                                      REAC:R-MMU-372790
## 435                                                     REAC:R-MMU-6803157
## 436                                                     REAC:R-MMU-2172127
## 437                                                      REAC:R-MMU-373076
## 438                                                     REAC:R-MMU-8953897
## 439                                                     REAC:R-MMU-5660526
## 440                                                      REAC:R-MMU-168249
## 441                                                     REAC:R-MMU-9012999
## 442                                                      REAC:R-MMU-194315
## 443                                                              TF:M00000
## 444                                                              TF:M00000
## 445                                                              TF:M00000
## 446                                                              TF:M01808
## 447                                                              TF:M00000
## 448                                                              TF:M00000
## 449                                                              TF:M00000
## 450                                                              TF:M00000
## 451                                                              TF:M00000
## 452                                                              TF:M03851
## 453                                                                       
## 454                                                              TF:M00000
## 455                                                              TF:M00000
## 456                                                              TF:M00000
## 457                                                              TF:M00000
## 458                                                              TF:M00000
## 459                                                              TF:M07107
## 460                                                              TF:M00000
## 461                                                              TF:M00000
## 462                                                              TF:M01160
## 463                                                              TF:M00000
## 464                                                              TF:M02031
## 465                                                              TF:M01266
## 466                                                              TF:M00000
## 467                                                              TF:M00000
## 468                                                              TF:M00000
## 469                                                              TF:M00000
## 470                                                              TF:M00000
## 471                                                              TF:M01835
## 472                                                              TF:M00000
## 473                                                              TF:M03848
## 474                                                              TF:M00000
## 475                                                              TF:M00000
## 476                                                              TF:M00000
## 477                                                              TF:M00000
## 478                                                              TF:M00000
## 479                                                              TF:M00000
## 480                                                              TF:M00000
## 481                                                              TF:M00000
## 482                                                              TF:M00646
## 483                                                              TF:M02101
## 484                                                              TF:M00000
## 485                                                              TF:M00000
## 486                                                              TF:M02941
## 487                                                              TF:M10285
## 488                                                              TF:M00000
## 489                                                              TF:M00000
## 490                                                              TF:M00000
## 491                                                              TF:M02084
## 492                                                              TF:M00271
## 493                                                              TF:M00751
## 494                                                              TF:M00000
## 495                                                              TF:M01733
## 496                                                              TF:M00000
## 497                                                              TF:M00000
## 498                                                              TF:M00000
## 499                                                              TF:M00000
## 500                                                              TF:M00000
## 501                                                              TF:M00192
## 502                                                              TF:M00000
## 503                                                              TF:M00000
## 504                                                              TF:M00000
## 505                                                              TF:M00000
## 506                                                              TF:M00000
## 507                                                              TF:M07461
## 508                                                              TF:M00000
## 509                                                              TF:M00000
## 510                                                              TF:M00378
## 511                                                              TF:M00000
## 512                                                              TF:M00000
## 513                                                              TF:M00000
## 514                                                              TF:M00000
## 515                                                              TF:M00000
## 516                                                              TF:M00000
## 517                                                              TF:M00000
## 518                                                              TF:M00701
## 519                                                              TF:M00000
## 520                                                              TF:M00000
## 521                                                              TF:M00000
## 522                                                              TF:M03580
## 523                                                              TF:M00000
## 524                                                              TF:M00000
## 525                                                              TF:M00000
## 526                                                              TF:M01822
## 527                                                              TF:M08888
## 528                                                              TF:M00000
## 529                                                              TF:M00000
## 530                                                                       
## 531                                                              WP:000000
## 532                                                              WP:000000
## 533                                                              WP:000000
## 534                                                              WP:000000
## 535                                                              WP:000000
## 536                                                              WP:000000
## 537                                                              WP:000000
## 538                                                              WP:000000
## 539                                                              WP:000000
# what are our outputs  
#term size
#query size
#query
#intersection size
# plot our results using in built function in g:profiler -> which one is it? 
gostplot(gost_results_obj)
# what does as_short_link = FALSE do in gost() function? 
gost_results_obj <- gost(query = upreg_gene_ids, organism = "mmusculus",exclude_iea = TRUE,correction_method = "g_SCS",custom_bg = all_gene_ids,as_short_link = TRUE )
## Detected custom background input, domain scope is set to 'custom'
gost_results_obj
## [1] "https://biit.cs.ut.ee/gplink/l/cldugrK2Sh"

Answer ->

# Filter results table for genesets with between 5-300 genes 
  1. Try querying multiple gene lists at the same time (up and down regulated genes) using Multiple queries - see the documentation

Can you plot these querys together?

Output the get_version_info() to save the versions of the databases that were used for the analysis!!

Output the sessionInfo() so know what packages we used

sessionInfo()
## R version 4.2.1 (2022-06-23 ucrt)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows Server x64 (build 17763)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_Zimbabwe.1252  LC_CTYPE=English_Zimbabwe.1252   
## [3] LC_MONETARY=English_Zimbabwe.1252 LC_NUMERIC=C                     
## [5] LC_TIME=English_Zimbabwe.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] gprofiler2_0.2.1 forcats_0.5.2    stringr_1.4.1    dplyr_1.0.10    
##  [5] purrr_0.3.5      readr_2.1.3      tidyr_1.2.1      tibble_3.1.8    
##  [9] ggplot2_3.4.0    tidyverse_1.3.2 
## 
## loaded via a namespace (and not attached):
##  [1] httr_1.4.4          sass_0.4.2          bit64_4.0.5        
##  [4] vroom_1.6.0         jsonlite_1.8.3      viridisLite_0.4.1  
##  [7] modelr_0.1.10       bslib_0.4.1         shiny_1.7.3        
## [10] assertthat_0.2.1    googlesheets4_1.0.1 cellranger_1.1.0   
## [13] yaml_2.3.6          pillar_1.8.1        backports_1.4.1    
## [16] glue_1.6.2          digest_0.6.30       promises_1.2.0.1   
## [19] rvest_1.0.3         colorspace_2.0-3    htmltools_0.5.3    
## [22] httpuv_1.6.6        pkgconfig_2.0.3     broom_1.0.1        
## [25] haven_2.5.1         xtable_1.8-4        scales_1.2.1       
## [28] later_1.3.0         tzdb_0.3.0          googledrive_2.0.0  
## [31] generics_0.1.3      ellipsis_0.3.2      cachem_1.0.6       
## [34] withr_2.5.0         lazyeval_0.2.2      cli_3.4.1          
## [37] mime_0.12           magrittr_2.0.3      crayon_1.5.2       
## [40] readxl_1.4.1        evaluate_0.18       fs_1.5.2           
## [43] fansi_1.0.3         xml2_1.3.3          tools_4.2.1        
## [46] data.table_1.14.4   hms_1.1.2           gargle_1.2.1       
## [49] lifecycle_1.0.3     plotly_4.10.1       munsell_0.5.0      
## [52] reprex_2.0.2        compiler_4.2.1      jquerylib_0.1.4    
## [55] rlang_1.0.6         grid_4.2.1          RCurl_1.98-1.9     
## [58] rstudioapi_0.14     htmlwidgets_1.5.4   crosstalk_1.2.0    
## [61] bitops_1.0-7        rmarkdown_2.18      gtable_0.3.1       
## [64] DBI_1.1.3           R6_2.5.1            lubridate_1.8.0    
## [67] knitr_1.40          fastmap_1.1.0       bit_4.0.4          
## [70] utf8_1.2.2          stringi_1.7.8       parallel_4.2.1     
## [73] Rcpp_1.0.9          vctrs_0.5.0         dbplyr_2.2.1       
## [76] tidyselect_1.2.0    xfun_0.34

Now knit your report to get a lovely html file that you can share -> this is good practise as it creates a permanent record of your plots/analysis output and also makes sure your script runs without error from start to finish!